Model quality ?

For models with atomic structures, MolProbity analysis is performed. For models with coarse-grained or multi-scale structures, excluded volume analysis is performed.

Standard geometry: bond outliers ?

There are no bond length outliers.
Standard geometry: angle outliers ?

There are 320 bond angle outliers in this entry (0.88% of 36512 assessed bonds). A summary is provided below. The output is limited to 100 rows.

Chain Res Type Atoms |Z| Observed (Å) Ideal (Å) Model ID (Worst) Models (Total)
A
336
GLY
C-N-CA
8.54
137.06
121.70
3
2
A
338
LYS
C-N-CA
8.43
136.87
121.70
8
5
A
322
ASP
C-N-CA
8.00
136.09
121.70
1
1
A
339
ASP
O-C-N
7.92
110.33
123.00
4
2
A
218
LYS
C-N-CA
7.64
135.45
121.70
6
1
A
317
ARG
C-N-CA
7.56
135.31
121.70
6
2
A
339
ASP
C-N-CA
7.48
135.17
121.70
10
2
A
321
ILE
C-N-CA
7.23
108.69
121.70
1
2
A
169
GLY
C-N-CA
6.96
134.23
121.70
7
2
A
3
LYS
C-N-CA
6.96
134.23
121.70
9
3
A
325
ALA
CA-C-N
6.94
127.30
116.90
6
1
A
2
LYS
C-N-CA
6.91
134.14
121.70
5
3
A
339
ASP
C-CA-CB
6.74
122.90
110.10
4
1
A
26
ASN
OD1-CG-ND2
6.71
115.89
122.60
10
4
A
316
GLN
C-N-CA
6.65
133.67
121.70
1
5
A
342
THR
C-N-CA
6.56
133.51
121.70
4
2
A
206
PRO
C-CA-CB
6.33
122.12
110.10
6
1
A
77
ASP
CA-CB-CG
6.30
118.90
112.60
4
2
A
212
THR
C-N-CA
6.26
132.96
121.70
7
1
A
45
ILE
C-N-CA
6.21
132.88
121.70
3
2
A
220
ASP
CA-CB-CG
6.21
118.81
112.60
7
1
A
126
ASP
CA-CB-CG
6.12
118.72
112.60
10
1
A
343
GLN
C-CA-CB
6.11
121.72
110.10
8
1
A
99
GLN
OE1-CD-NE2
6.01
116.59
122.60
8
9
A
343
GLN
CA-C-N
6.00
125.90
116.90
8
1
A
329
ARG
C-N-CA
5.96
132.42
121.70
8
1
A
341
VAL
C-N-CA
5.92
132.35
121.70
4
1
A
322
ASP
C-CA-CB
5.91
121.34
110.10
1
1
A
308
GLY
C-N-CA
5.85
132.22
121.70
1
4
A
55
GLN
OE1-CD-NE2
5.84
116.76
122.60
1
2
A
323
CYS
C-N-CA
5.82
132.18
121.70
8
2
A
217
LEU
C-N-CA
5.82
132.18
121.70
6
1
A
235
GLN
OE1-CD-NE2
5.76
116.84
122.60
9
10
A
208
PRO
C-N-CA
5.75
132.04
121.70
1
2
A
202
PRO
C-N-CA
5.71
131.98
121.70
6
1
A
193
GLN
OE1-CD-NE2
5.69
116.91
122.60
7
6
A
324
LEU
CA-CB-CG
5.62
135.98
116.30
1
1
A
1
MET
C-N-CA
5.62
131.81
121.70
1
3
A
309
ASN
C-N-CA
5.62
131.81
121.70
8
4
A
20
GLN
OE1-CD-NE2
5.58
117.02
122.60
5
5
A
193
GLN
C-N-CA
5.50
131.60
121.70
5
1
A
263
ARG
C-N-CA
5.50
131.60
121.70
6
2
A
340
VAL
CA-CB-CG1
5.50
119.75
110.40
10
1
A
317
ARG
N-CA-C
5.50
126.39
111.00
1
1
A
319
ALA
C-N-CA
5.49
131.59
121.70
7
1
A
345
GLN
OE1-CD-NE2
5.44
117.16
122.60
3
9
A
50
PRO
N-CA-CB
5.44
108.98
103.00
10
1
A
180
ASN
OD1-CG-ND2
5.40
117.20
122.60
4
1
A
38
GLN
OE1-CD-NE2
5.39
117.21
122.60
2
8
A
315
LYS
C-N-CA
5.30
131.24
121.70
5
2
A
337
ILE
C-N-CA
5.28
131.21
121.70
6
1
A
25
ASP
C-N-CA
5.27
131.19
121.70
4
1
A
213
LYS
C-N-CA
5.26
131.16
121.70
5
2
A
65
GLN
OE1-CD-NE2
5.21
117.39
122.60
5
9
A
320
LEU
C-N-CA
5.21
131.08
121.70
1
1
A
170
ASP
CA-CB-CG
5.20
117.80
112.60
5
1
A
166
ASN
OD1-CG-ND2
5.18
117.42
122.60
5
4
A
328
ARG
C-N-CA
5.16
130.99
121.70
5
3
A
254
SER
C-N-CA
5.15
130.97
121.70
5
1
A
255
VAL
C-N-CA
5.14
130.96
121.70
10
1
A
96
GLN
OE1-CD-NE2
5.11
117.49
122.60
5
10
A
211
GLN
OE1-CD-NE2
5.09
117.51
122.60
4
2
A
344
PRO
C-N-CA
5.05
130.78
121.70
2
1
A
316
GLN
OE1-CD-NE2
5.02
117.58
122.60
4
5
A
240
GLN
OE1-CD-NE2
5.02
117.58
122.60
8
9
A
334
VAL
C-N-CA
5.02
130.73
121.70
5
1
A
197
ALA
CA-C-O
5.01
112.29
120.80
8
1
A
282
VAL
CA-CB-CG1
4.99
118.89
110.40
10
1
A
195
GLU
C-N-CA
4.98
130.67
121.70
7
1
A
170
ASP
C-N-CA
4.98
130.66
121.70
5
1
A
328
ARG
NE-CZ-NH2
4.97
123.68
119.20
6
1
A
216
THR
CA-CB-CG2
4.94
118.90
110.50
9
1
A
286
ILE
CA-CB-CG2
4.94
118.89
110.50
10
1
A
218
LYS
CA-C-N
4.92
126.04
116.20
6
2
A
318
ALA
C-N-CA
4.91
130.55
121.70
8
2
A
113
ASP
CA-CB-CG
4.90
117.50
112.60
3
1
A
343
GLN
OE1-CD-NE2
4.87
117.73
122.60
6
6
A
319
ALA
N-CA-CB
4.87
103.10
110.40
1
1
A
135
ASN
C-N-CA
4.82
130.37
121.70
4
1
A
82
MET
CA-CB-CG
4.81
104.48
114.10
8
1
A
244
GLN
OE1-CD-NE2
4.80
117.80
122.60
4
10
A
313
ASN
OD1-CG-ND2
4.80
117.80
122.60
10
1
A
153
THR
CA-C-N
4.80
124.09
116.90
3
1
A
324
LEU
C-N-CA
4.75
130.25
121.70
1
1
A
67
ASN
OD1-CG-ND2
4.74
117.86
122.60
4
1
A
199
VAL
N-CA-C
4.72
97.79
111.00
8
1
A
13
ALA
C-N-CA
4.71
130.18
121.70
5
1
A
323
CYS
CA-C-N
4.70
125.61
116.20
1
1
A
37
SER
C-CA-CB
4.68
118.99
110.10
4
1
A
262
ASP
CA-CB-CG
4.66
117.26
112.60
4
1
A
46
ASN
OD1-CG-ND2
4.65
117.95
122.60
2
1
A
163
GLN
OE1-CD-NE2
4.65
117.95
122.60
6
7
A
253
GLY
C-N-CA
4.63
130.04
121.70
10
3
A
319
ALA
N-CA-C
4.62
123.93
111.00
6
2
A
345
GLN
C-N-CA
4.60
129.98
121.70
5
2
A
46
ASN
C-N-CA
4.59
129.96
121.70
3
2
A
159
ARG
NE-CZ-NH2
4.58
123.32
119.20
10
2
A
338
LYS
CA-C-N
4.58
125.35
116.20
8
1
A
172
HIS
CB-CG-CD2
4.57
125.26
131.20
8
4
A
167
ASN
CA-CB-CG
4.56
117.16
112.60
1
1

Too-close contacts ?

The following all-atom clashscore is based on a MolProbity analysis. All-atom clashscore is defined as the number of clashes found per 1000 atoms (including hydrogen atoms). The table below contains clashscores for all atomic models in this entry.

Model ID Clash score Number of clashes
1
4.82
25
2
3.86
20
3
0.77
4
4
6.56
34
5
3.09
16
6
3.28
17
7
4.05
21
8
8.87
46
9
9.26
48
10
5.78
30

There are 261 clashes. The table below contains the detailed list of all clashes based on a MolProbity analysis. Bad clashes are >= 0.4 Angstrom. The output is limited to 100 rows.

Atom 1 Atom 2 Clash(Å) Model ID (Worst) Models (Total)
A:230:LEU:HD22
A:284:TYR:CE2
0.90
9
2
A:230:LEU:HD13
A:284:TYR:CD1
0.86
10
1
A:322:ASP:C
A:324:LEU:HB2
0.86
1
1
A:286:ILE:HD13
A:295:ILE:HD13
0.82
10
2
A:217:LEU:HA
A:345:GLN:HA
0.82
9
1
A:238:LEU:HB3
A:285:LEU:HD21
0.77
8
1
A:258:LEU:CD2
A:330:VAL:H
0.77
8
2
A:261:THR:HG22
A:273:LEU:CD2
0.76
8
1
A:241:LEU:HD22
A:340:VAL:HG21
0.70
4
1
A:238:LEU:CB
A:285:LEU:HD21
0.68
8
1
A:258:LEU:HD22
A:329:ARG:HA
0.67
9
3
A:123:TRP:CZ2
A:169:GLY:HA2
0.67
9
1
A:101:THR:HG22
A:119:GLY:HA3
0.66
5
1
A:322:ASP:O
A:324:LEU:HB2
0.65
1
1
A:278:ALA:HB1
A:297:ALA:HB1
0.65
1
4
A:165:THR:HB
A:168:ILE:HD11
0.64
9
2
A:94:LYS:HE3
A:126:ASP:HB2
0.64
10
1
A:230:LEU:HD13
A:284:TYR:CG
0.64
10
1
A:258:LEU:CD2
A:300:MET:HE2
0.64
4
1
A:209:GLU:HB3
A:217:LEU:HD13
0.64
8
1
A:261:THR:HG22
A:273:LEU:HD23
0.64
8
1
A:333:GLU:O
A:334:VAL:HG23
0.64
5
1
A:211:GLN:O
A:212:THR:HG23
0.63
5
1
A:302:GLU:CD
A:320:LEU:HD11
0.63
5
1
A:39:TYR:CE1
A:82:MET:HE2
0.63
9
1
A:209:GLU:CB
A:217:LEU:HB3
0.62
2
1
A:323:CYS:N
A:324:LEU:HB2
0.62
1
1
A:210:VAL:O
A:217:LEU:HD12
0.61
8
1
A:43:GLY:CA
A:176:THR:HG21
0.60
6
2
A:200:VAL:HG13
A:269:TYR:CE1
0.60
9
1
A:248:LEU:HD11
A:339:ASP:HB2
0.60
4
1
A:42:THR:HG21
A:82:MET:HE1
0.59
10
1
A:123:TRP:CZ2
A:169:GLY:CA
0.59
9
1
A:230:LEU:HD11
A:284:TYR:CZ
0.59
7
1
A:24:LYS:H
A:193:GLN:NE2
0.58
5
1
A:215:PHE:CE2
A:217:LEU:HD11
0.58
8
1
A:230:LEU:HD22
A:284:TYR:CD2
0.58
10
2
A:286:ILE:HG12
A:295:ILE:HD12
0.57
4
1
A:111:ASP:CG
A:143:VAL:HG13
0.57
4
1
A:230:LEU:HD13
A:284:TYR:CE1
0.57
10
1
A:258:LEU:HD22
A:330:VAL:H
0.57
8
1
A:39:TYR:CD1
A:82:MET:HE1
0.56
8
1
A:123:TRP:HZ3
A:125:ALA:HB2
0.56
9
1
A:144:PHE:HB2
A:164:TRP:CD1
0.56
5
1
A:33:LYS:C
A:35:GLY:H
0.56
4
1
A:341:VAL:O
A:342:THR:HG23
0.56
10
1
A:19:ALA:HA
A:191:PHE:CZ
0.56
7
2
A:39:TYR:CE1
A:53:GLU:HB2
0.56
5
1
A:39:TYR:CZ
A:178:PRO:CG
0.56
1
1
A:287:SER:C
A:346:ALA:HB3
0.55
4
1
A:230:LEU:HB3
A:284:TYR:CE1
0.55
9
1
A:124:ARG:HH21
A:136:HIS:CE1
0.55
9
1
A:217:LEU:HD23
A:345:GLN:HA
0.55
9
1
A:306:VAL:O
A:307:THR:HG23
0.55
2
2
A:199:VAL:C
A:201:ALA:H
0.55
8
1
A:282:VAL:HG13
A:295:ILE:HG21
0.55
4
3
A:43:GLY:HA3
A:176:THR:HG21
0.55
2
1
A:218:LYS:C
A:346:ALA:HA
0.55
9
1
A:197:ALA:O
A:198:PRO:C
0.55
8
3
A:290:ILE:HG21
A:295:ILE:HD11
0.54
4
1
A:39:TYR:CZ
A:178:PRO:HG3
0.54
1
1
A:123:TRP:CH2
A:169:GLY:HA3
0.54
9
1
A:43:GLY:HA2
A:176:THR:HG21
0.54
6
1
A:250:PRO:HG2
A:338:LYS:HE3
0.54
1
1
A:282:VAL:HG22
A:295:ILE:CG2
0.54
9
2
A:215:PHE:HE2
A:217:LEU:HD11
0.53
8
1
A:121:MET:HE2
A:123:TRP:HB3
0.53
7
1
A:230:LEU:HB2
A:284:TYR:CZ
0.53
10
1
A:209:GLU:HB3
A:217:LEU:HB3
0.53
2
1
A:155:GLU:CG
A:194:GLY:HA3
0.53
9
1
A:217:LEU:HA
A:345:GLN:CA
0.53
9
1
A:258:LEU:HD22
A:300:MET:HE2
0.52
4
1
A:321:ILE:HG23
A:323:CYS:SG
0.52
1
1
A:19:ALA:HA
A:28:TRP:CD1
0.52
10
1
A:230:LEU:HD12
A:284:TYR:CG
0.52
4
1
A:286:ILE:CG1
A:295:ILE:HD12
0.52
4
1
A:122:VAL:HG23
A:143:VAL:CG2
0.51
5
1
A:39:TYR:CD1
A:82:MET:SD
0.51
8
1
A:256:VAL:HA
A:331:GLU:HA
0.51
8
1
A:39:TYR:CD1
A:82:MET:CE
0.51
8
1
A:216:THR:HB
A:345:GLN:CD
0.51
9
1
A:319:ALA:C
A:321:ILE:H
0.51
1
1
A:199:VAL:C
A:201:ALA:N
0.51
8
1
A:213:LYS:O
A:214:HIS:CD2
0.51
9
1
A:3:LYS:O
A:4:THR:HG23
0.50
2
1
A:209:GLU:CD
A:217:LEU:HD22
0.50
2
1
A:153:THR:HB
A:154:PRO:HD2
0.50
5
1
A:230:LEU:CB
A:284:TYR:CZ
0.50
10
1
A:333:GLU:OE2
A:335:LYS:HE3
0.50
2
1
A:19:ALA:HA
A:191:PHE:CE1
0.50
7
1
A:261:THR:HG22
A:273:LEU:HD22
0.50
8
1
A:202:PRO:HA
A:338:LYS:HE3
0.50
4
1
A:217:LEU:HD23
A:345:GLN:H
0.50
9
1
A:309:ASN:O
A:310:THR:HG23
0.50
4
1
A:217:LEU:HD23
A:345:GLN:N
0.50
9
1
A:238:LEU:HD13
A:285:LEU:CD2
0.50
10
1
A:15:PHE:CE2
A:30:THR:HG23
0.50
7
1
A:255:VAL:HG21
A:337:ILE:CD1
0.49
2
1
A:168:ILE:HD12
A:180:ASN:HB2
0.49
9
1
A:274:SER:HB3
A:299:GLY:CA
0.49
9
1

Torsion angles: Protein backbone ?

In the following table, Ramachandran outliers are listed. The Analysed column shows the number of residues for which the backbone conformation was analysed.

Model ID Analysed Favored Allowed Outliers
1
344
288
36
20
2
344
298
26
20
3
344
243
79
22
4
344
236
61
47
5
344
281
39
24
6
344
296
30
18
7
344
304
26
14
8
344
296
28
20
9
344
286
43
15
10
344
303
28
13

There are 108 unique backbone outliers. Detailed list of outliers are tabulated below. The output is limited to 100 rows.

Chain Res Type Models (Total)
A
345
GLN
7
A
174
ILE
6
A
340
VAL
6
A
342
THR
6
A
3
LYS
5
A
200
VAL
5
A
313
ASN
5
A
317
ARG
5
A
2
LYS
4
A
17
THR
4
A
47
ASN
4
A
90
ASN
4
A
211
GLN
4
A
213
LYS
4
A
214
HIS
4
A
264
ILE
4
A
309
ASN
4
A
15
PHE
3
A
46
ASN
3
A
170
ASP
3
A
171
ALA
3
A
199
VAL
3
A
302
GLU
3
A
308
GLY
3
A
315
LYS
3
A
323
CYS
3
A
339
ASP
3
A
344
PRO
3
A
12
LEU
2
A
14
GLY
2
A
26
ASN
2
A
45
ILE
2
A
52
HIS
2
A
53
GLU
2
A
172
HIS
2
A
273
LEU
2
A
304
ASN
2
A
305
PRO
2
A
316
GLN
2
A
319
ALA
2
A
324
LEU
2
A
325
ALA
2
A
327
ASP
2
A
329
ARG
2
A
333
GLU
2
A
337
ILE
2
A
343
GLN
2
A
7
ALA
1
A
10
VAL
1
A
13
ALA
1
A
16
ALA
1
A
18
VAL
1
A
22
ALA
1
A
23
PRO
1
A
34
LEU
1
A
36
TRP
1
A
38
GLN
1
A
40
HIS
1
A
41
ASP
1
A
43
GLY
1
A
44
PHE
1
A
48
ASN
1
A
51
THR
1
A
58
ALA
1
A
62
GLY
1
A
85
LYS
1
A
130
ASN
1
A
134
LYS
1
A
136
HIS
1
A
137
ASP
1
A
140
VAL
1
A
148
VAL
1
A
153
THR
1
A
168
ILE
1
A
176
THR
1
A
179
ASP
1
A
181
GLY
1
A
193
GLN
1
A
194
GLY
1
A
195
GLU
1
A
202
PRO
1
A
203
ALA
1
A
207
ALA
1
A
209
GLU
1
A
210
VAL
1
A
212
THR
1
A
217
LEU
1
A
219
SER
1
A
228
ALA
1
A
249
ASP
1
A
250
PRO
1
A
252
ASP
1
A
275
GLU
1
A
287
SER
1
A
301
GLY
1
A
306
VAL
1
A
307
THR
1
A
310
THR
1
A
311
CYS
1
A
312
ASP
1

Torsion angles : Protein sidechains ?
In the following table, sidechain rotameric outliers are listed. The Analysed column shows the number of residues for which the sidechain conformation was analysed.

Model ID Analysed Favored Allowed Outliers
1
271
248
15
8
2
271
255
9
7
3
271
249
9
13
4
271
244
19
8
5
271
256
8
7
6
271
252
9
10
7
271
260
6
5
8
271
258
8
5
9
271
259
4
8
10
271
256
11
4

There are 50 unique sidechain outliers. Detailed list of outliers are tabulated below.

Chain Res Type Models (Total)
A
4
THR
6
A
241
LEU
6
A
173
THR
3
A
222
LEU
3
A
225
PHE
3
A
230
LEU
3
A
51
THR
2
A
164
TRP
2
A
185
LEU
2
A
219
SER
2
A
248
LEU
2
A
307
THR
2
A
314
VAL
2
A
17
THR
1
A
18
VAL
1
A
77
ASP
1
A
84
TYR
1
A
88
VAL
1
A
113
ASP
1
A
116
THR
1
A
127
THR
1
A
131
VAL
1
A
138
THR
1
A
158
THR
1
A
172
HIS
1
A
206
PRO
1
A
212
THR
1
A
217
LEU
1
A
226
ASN
1
A
238
LEU
1
A
261
THR
1
A
262
ASP
1
A
263
ARG
1
A
267
ASP
1
A
269
TYR
1
A
273
LEU
1
A
274
SER
1
A
275
GLU
1
A
295
ILE
1
A
303
SER
1
A
306
VAL
1
A
310
THR
1
A
311
CYS
1
A
320
LEU
1
A
323
CYS
1
A
327
ASP
1
A
339
ASP
1
A
340
VAL
1
A
341
VAL
1
A
343
GLN
1