PDB-IHM

4. Model quality ?

For models with atomic structures, MolProbity analysis is performed. For models with coarse-grained or multi-scale structures, excluded volume analysis is performed.

4.1b. MolProbity Analysis ?

Excluded volume satisfaction for the models in the entry are listed below. The Analysed column shows the number of particle-partice or particle-atom pairs for which excluded volume was analysed.

Standard geometry: bond outliers ?

There are no bond length outliers.

Standard geometry: angle outliers ?

There are 175 bond angle outliers in this entry (0.51% of 34489 assessed bonds). A summary is provided below. The output is limited to 100 rows.

Too-close contacts ?

The following all-atom clashscore is based on a MolProbity analysis. All-atom clashscore is defined as the number of clashes found per 1000 atoms (including hydrogen atoms). The table below contains clashscores for all atomic models in this entry.

There are 16 clashes. The table below contains the detailed list of all clashes based on a MolProbity analysis. Bad clashes are >= 0.4 Angstrom.

Torsion angles: Protein backbone ?

In the following table, Ramachandran outliers are listed. The Analysed column shows the number of residues for which the backbone conformation was analysed.

There are 20 unique backbone outliers. Detailed list of outliers are tabulated below.

Torsion angles : Protein sidechains ?

In the following table, sidechain rotameric outliers are listed. The Analysed column shows the number of residues for which the sidechain conformation was analysed.

There are 30 unique sidechain outliers. Detailed list of outliers are tabulated below.