Model quality ?
For models with atomic structures, MolProbity analysis is performed. For models with coarse-grained or multi-scale structures, excluded volume analysis is performed.
Standard geometry: bond outliers ?
There are no bond length outliers.Standard geometry: angle outliers ?
There are 3 bond angle outliers in this entry (0.02% of 16171 assessed bonds). A summary is provided below.| Chain | Res | Type | Atoms | |Z| | Observed (Å) | Ideal (Å) | Model ID (Worst) | Models (Total) |
|---|---|---|---|---|---|---|---|---|
|
E
|
207
|
LLP
|
CE-NZ-C4'
|
12.74
|
81.04
|
119.26
|
1
|
1
|
|
A
|
207
|
LLP
|
CE-NZ-C4'
|
12.65
|
81.32
|
119.26
|
1
|
1
|
|
H
|
20
|
ASN
|
N-CA-C
|
4.49
|
98.42
|
111.00
|
1
|
1
|
Too-close contacts ?
The following all-atom clashscore is based on a MolProbity analysis. All-atom clashscore is defined as the number of clashes found per 1000 atoms (including hydrogen atoms). The table below contains clashscores for all atomic models in this entry.
| Model ID | Clash score | Number of clashes |
|---|---|---|
|
1
|
17.32
|
395
|
There are 395 clashes. The table below contains the detailed list of all clashes based on a MolProbity analysis. Bad clashes are >= 0.4 Angstrom. The output is limited to 100 rows.
| Atom 1 | Atom 2 | Clash(Å) | Model ID (Worst) | Models (Total) |
|---|---|---|---|---|
|
D:115:ILE:HG23
|
I:76:ARG:NH2
|
1.35
|
1
|
1
|
|
D:42:PRO:HG2
|
I:62:ASN:OD1
|
1.25
|
1
|
1
|
|
E:221:ARG:NH1
|
I:35:ASP:OD1
|
1.25
|
1
|
1
|
|
D:115:ILE:CG2
|
I:76:ARG:HH21
|
1.22
|
1
|
1
|
|
D:115:ILE:CG2
|
I:76:ARG:NH2
|
1.12
|
1
|
1
|
|
F:6:ARG:NH2
|
O:1:8Q1:O3
|
1.11
|
1
|
1
|
|
A:221:ARG:NH2
|
J:36:VAL:O
|
1.10
|
1
|
1
|
|
H:20:ASN:H
|
H:21:PRO:CD
|
1.09
|
1
|
1
|
|
A:71:ILE:HD12
|
A:219:ILE:HD12
|
1.03
|
1
|
1
|
|
H:20:ASN:H
|
H:21:PRO:HD3
|
1.01
|
1
|
1
|
|
H:20:ASN:N
|
H:21:PRO:CD
|
0.98
|
1
|
1
|
|
A:66:ASP:OD1
|
A:67:PRO:HD2
|
0.98
|
1
|
1
|
|
D:115:ILE:HG21
|
I:76:ARG:HE
|
0.98
|
1
|
1
|
|
D:108:PRO:HG3
|
I:55:VAL:HG11
|
0.97
|
1
|
1
|
|
D:42:PRO:CG
|
I:62:ASN:OD1
|
0.97
|
1
|
1
|
|
F:44:LYS:O
|
O:1:8Q1:H35
|
0.96
|
1
|
1
|
|
G:59:ALA:HA
|
G:62:ILE:HD13
|
0.95
|
1
|
1
|
|
A:220:ARG:HD3
|
A:223:PRO:HD2
|
0.94
|
1
|
1
|
|
H:20:ASN:O
|
H:22:ARG:NE
|
0.94
|
1
|
1
|
|
C:59:ALA:HA
|
C:62:ILE:HD13
|
0.92
|
1
|
1
|
|
D:115:ILE:CG2
|
I:76:ARG:CZ
|
0.91
|
1
|
1
|
|
D:115:ILE:HG23
|
I:76:ARG:CZ
|
0.89
|
1
|
1
|
|
A:76:ALA:HB2
|
A:204:SER:HB2
|
0.89
|
1
|
1
|
|
D:115:ILE:CG2
|
I:76:ARG:NE
|
0.89
|
1
|
1
|
|
D:115:ILE:CG2
|
I:76:ARG:HE
|
0.88
|
1
|
1
|
|
H:16:ASP:O
|
H:20:ASN:HB2
|
0.88
|
1
|
1
|
|
D:108:PRO:CG
|
I:55:VAL:HG11
|
0.88
|
1
|
1
|
|
A:270:ARG:NH2
|
A:363:THR:O
|
0.88
|
1
|
1
|
|
E:270:ARG:NH2
|
E:363:THR:O
|
0.86
|
1
|
1
|
|
A:286:LEU:HD11
|
A:376:ILE:HA
|
0.86
|
1
|
1
|
|
A:391:MET:O
|
A:395:GLY:N
|
0.85
|
1
|
1
|
|
A:334:SER:CB
|
I:40:SER:HB3
|
0.85
|
1
|
1
|
|
D:115:ILE:HG23
|
I:76:ARG:HH21
|
0.84
|
1
|
1
|
|
D:115:ILE:HG21
|
I:76:ARG:NE
|
0.84
|
1
|
1
|
|
D:43:ALA:HA
|
I:61:PRO:HG3
|
0.82
|
1
|
1
|
|
D:38:LEU:HD13
|
D:49:LYS:HB2
|
0.80
|
1
|
1
|
|
A:221:ARG:HH12
|
J:35:ASP:HA
|
0.80
|
1
|
1
|
|
D:108:PRO:CB
|
I:55:VAL:HG11
|
0.80
|
1
|
1
|
|
E:387:PRO:O
|
E:391:MET:HG3
|
0.79
|
1
|
1
|
|
D:43:ALA:HB2
|
I:59:GLN:OE1
|
0.79
|
1
|
1
|
|
H:19:GLU:HA
|
H:21:PRO:HD3
|
0.77
|
1
|
1
|
|
A:341:LEU:O
|
A:346:THR:HG22
|
0.77
|
1
|
1
|
|
E:315:LEU:O
|
E:319:LEU:HD12
|
0.76
|
1
|
1
|
|
E:177:TYR:CE2
|
E:225:VAL:HG13
|
0.76
|
1
|
1
|
|
H:20:ASN:N
|
H:21:PRO:HD3
|
0.76
|
1
|
1
|
|
D:43:ALA:HA
|
I:61:PRO:CG
|
0.76
|
1
|
1
|
|
B:41:ARG:NH1
|
C:35:ASP:OD2
|
0.76
|
1
|
1
|
|
D:8:VAL:HG13
|
D:9:ASP:H
|
0.75
|
1
|
1
|
|
C:12:GLY:O
|
C:16:GLY:N
|
0.75
|
1
|
1
|
|
E:247:THR:HB
|
E:248:PRO:HD3
|
0.74
|
1
|
1
|
|
E:221:ARG:HH22
|
I:36:VAL:H
|
0.73
|
1
|
1
|
|
L:1:8Q1:N36
|
L:1:8Q1:O40
|
0.73
|
1
|
1
|
|
B:55:LEU:HB3
|
L:1:8Q1:O4
|
0.73
|
1
|
1
|
|
D:98:THR:CB
|
I:74:PRO:HD3
|
0.72
|
1
|
1
|
|
A:56:ARG:NH1
|
A:70:ILE:O
|
0.72
|
1
|
1
|
|
D:112:HIS:HA
|
I:66:TRP:CZ3
|
0.72
|
1
|
1
|
|
D:60:ILE:HB
|
D:85:LYS:O
|
0.71
|
1
|
1
|
|
E:85:LYS:HB2
|
E:230:LEU:HD11
|
0.71
|
1
|
1
|
|
A:66:ASP:OD1
|
A:67:PRO:CD
|
0.71
|
1
|
1
|
|
H:65:PHE:CD1
|
H:67:THR:HG23
|
0.70
|
1
|
1
|
|
A:315:LEU:O
|
A:319:LEU:HD12
|
0.69
|
1
|
1
|
|
A:71:ILE:HD12
|
A:219:ILE:CD1
|
0.69
|
1
|
1
|
|
H:89:VAL:HG13
|
H:125:LEU:HD22
|
0.69
|
1
|
1
|
|
B:81:LEU:N
|
B:84:GLU:OE1
|
0.69
|
1
|
1
|
|
A:387:PRO:O
|
A:391:MET:HG3
|
0.69
|
1
|
1
|
|
A:221:ARG:HH22
|
J:36:VAL:C
|
0.68
|
1
|
1
|
|
A:209:TYR:OH
|
A:361:ARG:N
|
0.68
|
1
|
1
|
|
D:130:LEU:O
|
D:130:LEU:HD13
|
0.68
|
1
|
1
|
|
B:39:ALA:HB1
|
L:1:8Q1:H22
|
0.68
|
1
|
1
|
|
E:84:ILE:HD11
|
E:108:VAL:HG13
|
0.68
|
1
|
1
|
|
A:221:ARG:NH1
|
J:35:ASP:HA
|
0.68
|
1
|
1
|
|
A:266:TYR:OH
|
B:38:ASP:OD2
|
0.68
|
1
|
1
|
|
A:71:ILE:CD1
|
A:219:ILE:HD12
|
0.67
|
1
|
1
|
|
D:108:PRO:HB2
|
I:57:ASN:OD1
|
0.67
|
1
|
1
|
|
A:275:SER:OG
|
A:303:ILE:HD11
|
0.67
|
1
|
1
|
|
D:27:LEU:N
|
D:51:GLN:OE1
|
0.67
|
1
|
1
|
|
A:341:LEU:HB3
|
A:346:THR:HG21
|
0.67
|
1
|
1
|
|
B:18:ARG:HG2
|
C:44:MET:HE3
|
0.66
|
1
|
1
|
|
D:108:PRO:HB3
|
I:55:VAL:HG11
|
0.65
|
1
|
1
|
|
E:398:LEU:H
|
E:398:LEU:HD22
|
0.65
|
1
|
1
|
|
D:43:ALA:HB2
|
I:61:PRO:HG2
|
0.65
|
1
|
1
|
|
E:270:ARG:HH21
|
E:274:LEU:HD11
|
0.65
|
1
|
1
|
|
E:43:ALA:O
|
E:47:GLU:HG2
|
0.65
|
1
|
1
|
|
H:36:THR:HG22
|
H:127:ASP:OD2
|
0.64
|
1
|
1
|
|
A:222:ARG:CB
|
A:223:PRO:CD
|
0.64
|
1
|
1
|
|
E:69:GLU:OE1
|
E:220:ARG:HA
|
0.64
|
1
|
1
|
|
A:84:ILE:HD11
|
A:108:VAL:HG13
|
0.63
|
1
|
1
|
|
E:76:ALA:HB2
|
E:204:SER:HB2
|
0.63
|
1
|
1
|
|
E:222:ARG:CB
|
E:223:PRO:CD
|
0.62
|
1
|
1
|
|
H:65:PHE:HD1
|
H:67:THR:HG23
|
0.62
|
1
|
1
|
|
E:69:GLU:CG
|
E:221:ARG:HG2
|
0.62
|
1
|
1
|
|
E:97:HIS:C
|
E:98:LEU:HD12
|
0.62
|
1
|
1
|
|
A:222:ARG:O
|
J:25:ALA:HB3
|
0.62
|
1
|
1
|
|
A:221:ARG:HH12
|
J:36:VAL:H
|
0.62
|
1
|
1
|
|
E:275:SER:OG
|
E:303:ILE:HD11
|
0.62
|
1
|
1
|
|
A:311:GLU:OE1
|
A:313:GLU:N
|
0.62
|
1
|
1
|
|
D:112:HIS:CB
|
I:66:TRP:HZ3
|
0.62
|
1
|
1
|
|
A:390:GLU:OE1
|
D:49:LYS:NZ
|
0.62
|
1
|
1
|
|
A:214:VAL:HB
|
A:249:LEU:HB3
|
0.62
|
1
|
1
|
|
A:85:LYS:O
|
A:89:ARG:HG3
|
0.62
|
1
|
1
|
Torsion angles: Protein backbone ?
In the following table, Ramachandran outliers are listed. The Analysed column shows the number of residues for which the backbone conformation was analysed.
| Model ID | Analysed | Favored | Allowed | Outliers |
|---|---|---|---|---|
|
1
|
1569
|
1499
|
52
|
18
|
| Chain | Res | Type | Models (Total) |
|---|---|---|---|
|
A
|
222
|
ARG
|
1
|
|
A
|
224
|
ARG
|
1
|
|
A
|
330
|
CYS
|
1
|
|
A
|
396
|
ILE
|
1
|
|
C
|
72
|
ILE
|
1
|
|
D
|
7
|
SER
|
1
|
|
D
|
8
|
VAL
|
1
|
|
D
|
32
|
LYS
|
1
|
|
D
|
42
|
PRO
|
1
|
|
D
|
45
|
GLY
|
1
|
|
E
|
222
|
ARG
|
1
|
|
E
|
223
|
PRO
|
1
|
|
E
|
333
|
ALA
|
1
|
|
E
|
335
|
LEU
|
1
|
|
H
|
18
|
TYR
|
1
|
|
H
|
20
|
ASN
|
1
|
|
H
|
42
|
PRO
|
1
|
|
H
|
85
|
LYS
|
1
|
Torsion angles : Protein sidechains ?
In the following table, sidechain rotameric outliers are listed. The Analysed column shows the number of residues for which the sidechain conformation was analysed.| Model ID | Analysed | Favored | Allowed | Outliers |
|---|---|---|---|---|
|
1
|
1122
|
1008
|
84
|
30
|
| Chain | Res | Type | Models (Total) |
|---|---|---|---|
|
A
|
121
|
GLN
|
1
|
|
A
|
221
|
ARG
|
1
|
|
A
|
226
|
ARG
|
1
|
|
B
|
65
|
VAL
|
1
|
|
C
|
10
|
ILE
|
1
|
|
C
|
36
|
SER
|
1
|
|
C
|
52
|
THR
|
1
|
|
E
|
92
|
ARG
|
1
|
|
E
|
121
|
GLN
|
1
|
|
F
|
61
|
ARG
|
1
|
|
G
|
20
|
GLU
|
1
|
|
G
|
36
|
SER
|
1
|
|
H
|
13
|
GLN
|
1
|
|
H
|
60
|
ILE
|
1
|
|
H
|
77
|
SER
|
1
|
|
H
|
133
|
GLU
|
1
|
|
I
|
2
|
ASP
|
1
|
|
I
|
4
|
THR
|
1
|
|
I
|
24
|
LEU
|
1
|
|
I
|
30
|
THR
|
1
|
|
I
|
44
|
THR
|
1
|
|
I
|
50
|
ASP
|
1
|
|
I
|
55
|
VAL
|
1
|
|
J
|
2
|
ASP
|
1
|
|
J
|
4
|
THR
|
1
|
|
J
|
24
|
LEU
|
1
|
|
J
|
30
|
THR
|
1
|
|
J
|
44
|
THR
|
1
|
|
J
|
50
|
ASP
|
1
|
|
J
|
55
|
VAL
|
1
|