Model quality ?
For models with atomic structures, MolProbity analysis is performed. For models with coarse-grained or multi-scale structures, excluded volume analysis is performed.
Standard geometry: bond outliers ?
There are no bond length outliers.Standard geometry: angle outliers ?
There are 254 bond angle outliers in this entry (0.68% of 37540 assessed bonds). A summary is provided below.| Chain | Res | Type | Atoms | |Z| | Observed (Å) | Ideal (Å) | Model ID (Worst) | Models (Total) |
|---|---|---|---|---|---|---|---|---|
|
A
|
84
|
G
|
C4'-O4'-C1'
|
7.23
|
102.67
|
109.90
|
3
|
10
|
|
A
|
19
|
C
|
O4'-C1'-C2'
|
6.66
|
100.94
|
107.60
|
2
|
10
|
|
A
|
39
|
U
|
C5'-C4'-C3'
|
5.62
|
107.57
|
116.00
|
5
|
3
|
|
A
|
17
|
C
|
C5'-C4'-C3'
|
5.53
|
107.71
|
116.00
|
2
|
10
|
|
A
|
66
|
G
|
C5'-C4'-C3'
|
5.37
|
107.95
|
116.00
|
1
|
6
|
|
A
|
25
|
U
|
C5'-C4'-C3'
|
5.11
|
108.34
|
116.00
|
4
|
10
|
|
A
|
82
|
C
|
O4'-C1'-C2'
|
5.05
|
102.55
|
107.60
|
9
|
3
|
|
A
|
26
|
C
|
C5'-C4'-C3'
|
5.05
|
108.43
|
116.00
|
6
|
10
|
|
A
|
37
|
A
|
C5'-C4'-C3'
|
4.94
|
108.58
|
116.00
|
2
|
10
|
|
A
|
70
|
C
|
C4'-O4'-C1'
|
4.89
|
105.01
|
109.90
|
9
|
3
|
|
A
|
94
|
A
|
C5'-C4'-C3'
|
4.88
|
108.68
|
116.00
|
9
|
10
|
|
A
|
16
|
C
|
C5'-C4'-C3'
|
4.83
|
108.75
|
116.00
|
2
|
10
|
|
A
|
9
|
C
|
C4'-O4'-C1'
|
4.79
|
105.11
|
109.90
|
2
|
1
|
|
A
|
52
|
U
|
C5'-C4'-C3'
|
4.70
|
108.95
|
116.00
|
2
|
4
|
|
A
|
70
|
C
|
C5'-C4'-C3'
|
4.70
|
108.95
|
116.00
|
4
|
10
|
|
A
|
39
|
U
|
C4'-O4'-C1'
|
4.68
|
105.22
|
109.90
|
2
|
1
|
|
A
|
51
|
A
|
O4'-C4'-C3'
|
4.66
|
108.66
|
104.00
|
10
|
6
|
|
A
|
4
|
G
|
C5'-C4'-C3'
|
4.62
|
109.07
|
116.00
|
9
|
10
|
|
A
|
7
|
A
|
C3'-C2'-C1'
|
4.62
|
105.92
|
101.30
|
2
|
4
|
|
A
|
87
|
C
|
C3'-C2'-C1'
|
4.58
|
106.08
|
101.50
|
7
|
4
|
|
A
|
26
|
C
|
O4'-C1'-C2'
|
4.54
|
103.06
|
107.60
|
8
|
6
|
|
A
|
87
|
C
|
C4'-C3'-O3'
|
4.54
|
106.20
|
113.00
|
4
|
6
|
|
A
|
94
|
A
|
O4'-C1'-C2'
|
4.42
|
103.18
|
107.60
|
4
|
10
|
|
A
|
25
|
U
|
C3'-C2'-C1'
|
4.42
|
105.72
|
101.30
|
4
|
4
|
|
A
|
53
|
U
|
C5'-C4'-C3'
|
4.38
|
109.42
|
116.00
|
8
|
10
|
|
A
|
39
|
U
|
C4'-C3'-C2'
|
4.30
|
98.30
|
102.60
|
1
|
3
|
|
A
|
36
|
G
|
C5'-C4'-C3'
|
4.22
|
109.67
|
116.00
|
5
|
10
|
|
A
|
66
|
G
|
OP1-P-OP2
|
4.22
|
106.94
|
119.60
|
2
|
4
|
|
A
|
91
|
A
|
C4'-O4'-C1'
|
4.22
|
105.48
|
109.70
|
9
|
10
|
|
A
|
39
|
U
|
OP1-P-OP2
|
4.20
|
107.00
|
119.60
|
1
|
6
|
|
A
|
70
|
C
|
O4'-C1'-N1
|
4.16
|
114.73
|
108.50
|
4
|
3
|
|
A
|
69
|
A
|
O3'-C3'-C2'
|
4.15
|
107.47
|
113.70
|
9
|
3
|
|
A
|
50
|
G
|
C4'-O4'-C1'
|
4.10
|
105.60
|
109.70
|
1
|
4
|
|
A
|
50
|
G
|
C5'-C4'-C3'
|
4.08
|
109.88
|
116.00
|
9
|
6
|
|
A
|
48
|
G
|
C4'-O4'-C1'
|
4.07
|
105.63
|
109.70
|
10
|
5
|
|
A
|
19
|
C
|
OP1-P-OP2
|
4.07
|
107.40
|
119.60
|
4
|
10
|
|
A
|
70
|
C
|
C3'-C2'-C1'
|
4.05
|
105.35
|
101.30
|
9
|
1
|
|
A
|
52
|
U
|
O4'-C1'-C2'
|
4.05
|
103.55
|
107.60
|
2
|
4
|
|
A
|
87
|
C
|
C5'-C4'-C3'
|
4.02
|
109.97
|
116.00
|
4
|
2
|
|
A
|
26
|
C
|
C2'-C1'-N1
|
4.02
|
118.03
|
112.00
|
5
|
2
|
|
A
|
9
|
C
|
C4'-C3'-C2'
|
4.01
|
98.59
|
102.60
|
2
|
1
|
Too-close contacts ?
The following all-atom clashscore is based on a MolProbity analysis. All-atom clashscore is defined as the number of clashes found per 1000 atoms (including hydrogen atoms). The table below contains clashscores for all atomic models in this entry.
| Model ID | Clash score | Number of clashes |
|---|---|---|
|
1
|
0.62
|
2
|
|
2
|
0.62
|
2
|
|
3
|
0.62
|
2
|
|
4
|
0.62
|
2
|
|
5
|
0.62
|
2
|
|
6
|
0.62
|
2
|
|
7
|
0.62
|
2
|
|
8
|
0.62
|
2
|
|
9
|
0.62
|
2
|
|
10
|
0.62
|
2
|
There are 20 clashes. The table below contains the detailed list of all clashes based on a MolProbity analysis. Bad clashes are >= 0.4 Angstrom.
| Atom 1 | Atom 2 | Clash(Å) | Model ID (Worst) | Models (Total) |
|---|---|---|---|---|
|
A:30:G:H22
|
A:44:U:H3
|
0.49
|
6
|
10
|
|
A:30:G:H1
|
A:44:U:H3
|
0.42
|
2
|
10
|
Torsion angles: Protein backbone ?
In the following table, Ramachandran outliers are listed. The Analysed column shows the number of residues for which the backbone conformation was analysed.
| Model ID | Analysed | Favored | Allowed | Outliers |
|---|---|---|---|---|
|
1
|
0
|
0
|
0
|
0
|
|
2
|
0
|
0
|
0
|
0
|
|
3
|
0
|
0
|
0
|
0
|
|
4
|
0
|
0
|
0
|
0
|
|
5
|
0
|
0
|
0
|
0
|
|
6
|
0
|
0
|
0
|
0
|
|
7
|
0
|
0
|
0
|
0
|
|
8
|
0
|
0
|
0
|
0
|
|
9
|
0
|
0
|
0
|
0
|
|
10
|
0
|
0
|
0
|
0
|
Torsion angles : Protein sidechains ?
In the following table, sidechain rotameric outliers are listed. The Analysed column shows the number of residues for which the sidechain conformation was analysed.| Model ID | Analysed | Favored | Allowed | Outliers |
|---|---|---|---|---|
|
1
|
0
|
0
|
0
|
0
|
|
2
|
0
|
0
|
0
|
0
|
|
3
|
0
|
0
|
0
|
0
|
|
4
|
0
|
0
|
0
|
0
|
|
5
|
0
|
0
|
0
|
0
|
|
6
|
0
|
0
|
0
|
0
|
|
7
|
0
|
0
|
0
|
0
|
|
8
|
0
|
0
|
0
|
0
|
|
9
|
0
|
0
|
0
|
0
|
|
10
|
0
|
0
|
0
|
0
|