Model quality ?

For models with atomic structures, MolProbity analysis is performed. For models with coarse-grained or multi-scale structures, excluded volume analysis is performed.

Standard geometry: bond outliers ?

There are 19400 bond length outliers in this entry (1.98% of 982002 assessed bonds). A summary is provided below. The output is limited to 100 rows.

Chain Res Type Atoms |Z| Observed (Å) Ideal (Å) Model ID (Worst) Models (Total)
A
74
HIS
ND1-CE1
11.60
1.44
1.32
146
47
A
507
HIS
ND1-CE1
10.66
1.43
1.32
47
57
A
6
HIS
ND1-CE1
10.47
1.43
1.32
200
44
A
358
ARG
CZ-NH2
10.26
1.20
1.33
92
53
A
74
HIS
CE1-NE2
9.98
1.42
1.32
37
44
A
507
HIS
CE1-NE2
9.90
1.42
1.32
112
48
A
85
HIS
ND1-CE1
9.83
1.42
1.32
92
43
A
91
HIS
ND1-CE1
9.71
1.42
1.32
129
52
A
243
HIS
ND1-CE1
9.58
1.42
1.32
159
53
A
74
HIS
CG-ND1
9.58
1.48
1.38
100
34
A
334
HIS
CG-CD2
9.56
1.46
1.35
105
22
A
378
HIS
CE1-NE2
9.51
1.42
1.32
105
42
A
6
HIS
CE1-NE2
9.49
1.42
1.32
23
46
A
406
ARG
CD-NE
9.47
1.59
1.46
106
22
A
378
HIS
CD2-NE2
9.42
1.48
1.37
189
23
A
243
HIS
CE1-NE2
9.35
1.41
1.32
157
56
A
150
HIS
CE1-NE2
9.30
1.41
1.32
175
51
A
527
HIS
CE1-NE2
9.26
1.41
1.32
90
52
A
527
HIS
ND1-CE1
9.13
1.41
1.32
206
45
A
527
HIS
CG-ND1
9.13
1.48
1.38
25
44
A
292
ARG
CZ-NH2
9.10
1.21
1.33
103
48
A
291
PRO
N-CD
9.10
1.35
1.47
55
16
A
378
HIS
ND1-CE1
9.07
1.41
1.32
97
47
A
151
ARG
CZ-NH2
9.04
1.21
1.33
14
47
A
91
HIS
CE1-NE2
8.98
1.41
1.32
115
50
A
357
HIS
ND1-CE1
8.87
1.41
1.32
64
58
A
334
HIS
CE1-NE2
8.84
1.41
1.32
161
45
A
81
TRP
NE1-CE2
8.84
1.47
1.37
177
26
A
434
ARG
CD-NE
8.84
1.58
1.46
104
21
A
507
HIS
CG-ND1
8.78
1.47
1.38
76
42
A
417
PRO
N-CD
8.77
1.35
1.47
169
19
A
378
HIS
CG-ND1
8.73
1.47
1.38
50
55
A
392
ARG
CZ-NH2
8.72
1.22
1.33
173
51
A
48
ARG
CZ-NH2
8.68
1.22
1.33
145
43
A
85
HIS
CE1-NE2
8.66
1.41
1.32
2
45
A
452
ARG
CZ-NH2
8.64
1.22
1.33
151
44
A
35
THR
CB-OG1
8.64
1.29
1.43
151
17
A
481
THR
C-N
8.63
1.45
1.33
137
12
A
7
MET
C-N
8.62
1.45
1.33
41
13
A
539
ARG
CZ-NH2
8.61
1.22
1.33
39
62
A
357
HIS
CE1-NE2
8.61
1.41
1.32
4
53
A
243
HIS
CG-ND1
8.59
1.47
1.38
34
37
A
150
HIS
ND1-CE1
8.58
1.41
1.32
61
55
A
507
HIS
CB-CG
8.58
1.62
1.50
116
23
A
373
PHE
C-N
8.58
1.45
1.33
90
11
A
223
ARG
N-CA
8.58
1.62
1.46
118
15
A
6
HIS
CG-ND1
8.55
1.47
1.38
27
36
A
409
GLY
CA-C
8.52
1.67
1.52
116
9
A
153
ARG
CZ-NH2
8.51
1.22
1.33
160
60
A
227
ARG
CZ-NH2
8.49
1.22
1.33
35
41
A
357
HIS
CG-ND1
8.48
1.47
1.38
116
30
A
271
SER
C-N
8.45
1.45
1.33
192
9
A
227
ARG
NE-CZ
8.39
1.23
1.33
119
24
A
334
HIS
ND1-CE1
8.38
1.40
1.32
54
51
A
433
TYR
C-N
8.35
1.45
1.33
92
14
A
91
HIS
CG-ND1
8.35
1.47
1.38
13
31
A
392
ARG
CD-NE
8.33
1.57
1.46
38
20
A
370
ARG
CD-NE
8.31
1.57
1.46
155
18
A
358
ARG
CD-NE
8.20
1.57
1.46
178
22
A
244
ARG
CZ-NH1
8.20
1.21
1.32
123
17
A
570
ARG
CZ-NH2
8.19
1.22
1.33
154
38
A
452
ARG
CD-NE
8.18
1.57
1.46
80
14
A
570
ARG
CD-NE
8.16
1.57
1.46
108
26
A
150
HIS
CG-CD2
8.14
1.44
1.35
128
20
A
334
HIS
CG-ND1
8.13
1.47
1.38
129
35
A
493
ARG
CZ-NH2
8.13
1.22
1.33
164
56
A
548
ARG
CZ-NH2
8.08
1.22
1.33
6
44
A
347
THR
CB-OG1
8.06
1.30
1.43
76
22
A
434
ARG
C-N
8.04
1.44
1.33
90
7
A
183
ARG
CZ-NH2
8.03
1.23
1.33
88
56
A
95
LEU
N-CA
8.03
1.61
1.46
143
4
A
212
THR
CB-OG1
7.99
1.31
1.43
109
13
A
6
HIS
CD2-NE2
7.97
1.46
1.37
175
21
A
268
ASP
C-N
7.96
1.44
1.33
60
9
A
392
ARG
CZ-NH1
7.94
1.21
1.32
183
21
A
362
ARG
CZ-NH1
7.94
1.21
1.32
158
18
A
411
LEU
C-N
7.94
1.44
1.33
125
8
A
362
ARG
CZ-NH2
7.94
1.23
1.33
151
48
A
581
THR
CB-OG1
7.93
1.31
1.43
136
21
A
151
ARG
NE-CZ
7.91
1.24
1.33
123
17
A
240
ARG
CZ-NH1
7.90
1.21
1.32
193
28
A
152
ILE
C-N
7.89
1.44
1.33
193
14
A
183
ARG
CD-NE
7.88
1.57
1.46
91
23
A
260
PRO
N-CA
7.88
1.58
1.47
56
10
A
114
TRP
NE1-CE2
7.83
1.46
1.37
48
27
A
79
TRP
NE1-CE2
7.82
1.46
1.37
29
31
A
522
ARG
CZ-NH2
7.81
1.23
1.33
42
51
A
357
HIS
CD2-NE2
7.77
1.46
1.37
191
17
A
341
GLN
C-N
7.75
1.44
1.33
27
13
A
244
ARG
CZ-NH2
7.75
1.23
1.33
17
42
A
223
ARG
CZ-NH2
7.73
1.23
1.33
153
51
A
20
ARG
CZ-NH2
7.71
1.23
1.33
82
60
A
299
THR
N-CA
7.71
1.60
1.46
68
8
A
358
ARG
CZ-NH1
7.69
1.22
1.32
10
29
A
243
HIS
CD2-NE2
7.68
1.29
1.37
193
22
A
383
GLU
C-N
7.68
1.44
1.33
138
10
A
227
ARG
CD-NE
7.64
1.56
1.46
60
14
A
440
LEU
CA-C
7.62
1.69
1.52
8
2
A
48
ARG
NE-CZ
7.59
1.41
1.33
82
18
A
6
HIS
CG-CD2
7.57
1.44
1.35
60
22

Standard geometry: angle outliers ?

There are 64907 bond angle outliers in this entry (4.91% of 1320872 assessed bonds). A summary is provided below. The output is limited to 100 rows.

Chain Res Type Atoms |Z| Observed (Å) Ideal (Å) Model ID (Worst) Models (Total)
A
229
PHE
CA-CB-CG
16.33
130.13
113.80
19
96
A
574
ASN
OD1-CG-ND2
16.06
106.54
122.60
14
82
A
541
GLN
OE1-CD-NE2
14.75
107.85
122.60
60
88
A
175
PHE
CA-CB-CG
14.72
128.52
113.80
187
52
A
150
HIS
CA-CB-CG
14.53
128.33
113.80
155
58
A
559
GLN
OE1-CD-NE2
14.46
108.14
122.60
202
112
A
274
PHE
CA-CB-CG
14.35
128.15
113.80
152
95
A
362
ARG
NE-CZ-NH2
14.19
131.97
119.20
73
59
A
220
ASN
OD1-CG-ND2
14.04
108.56
122.60
145
87
A
507
HIS
CA-CB-CG
13.90
127.70
113.80
69
55
A
412
GLN
OE1-CD-NE2
13.87
108.73
122.60
136
94
A
480
GLN
OE1-CD-NE2
13.73
108.87
122.60
134
117
A
387
GLN
OE1-CD-NE2
13.68
108.92
122.60
52
110
A
289
ASN
CA-CB-CG
13.68
126.28
112.60
144
70
A
546
GLN
OE1-CD-NE2
13.67
108.93
122.60
109
101
A
184
ASP
CA-CB-CG
13.61
126.21
112.60
198
68
A
177
ASP
CA-CB-CG
13.55
126.15
112.60
92
81
A
249
GLN
OE1-CD-NE2
13.48
109.12
122.60
92
92
A
522
ARG
NE-CZ-NH1
13.37
134.87
121.50
135
52
A
359
ASP
CA-CB-CG
13.33
125.93
112.60
92
55
A
351
GLN
OE1-CD-NE2
13.26
109.34
122.60
57
102
A
580
GLN
OE1-CD-NE2
13.25
109.35
122.60
179
110
A
20
ARG
NE-CZ-NH2
13.18
131.06
119.20
147
53
A
341
GLN
OE1-CD-NE2
13.18
109.42
122.60
43
103
A
174
PHE
CA-CB-CG
13.17
126.97
113.80
13
57
A
141
GLN
OE1-CD-NE2
13.14
109.46
122.60
83
97
A
441
GLN
OE1-CD-NE2
13.12
109.48
122.60
35
104
A
566
GLN
OE1-CD-NE2
13.07
109.53
122.60
38
118
A
344
GLN
OE1-CD-NE2
13.04
109.56
122.60
100
116
A
519
GLN
OE1-CD-NE2
13.03
109.57
122.60
155
108
A
394
ASP
CA-CB-CG
12.95
125.55
112.60
34
54
A
500
GLN
OE1-CD-NE2
12.95
109.65
122.60
100
96
A
321
GLN
OE1-CD-NE2
12.91
109.69
122.60
184
114
A
153
ARG
NE-CZ-NH2
12.91
130.82
119.20
183
61
A
392
ARG
NE-CZ-NH1
12.89
134.39
121.50
162
61
A
329
GLN
OE1-CD-NE2
12.85
109.75
122.60
110
106
A
135
ASN
OD1-CG-ND2
12.83
109.77
122.60
171
83
A
334
HIS
CA-CB-CG
12.78
126.58
113.80
43
51
A
276
ASN
OD1-CG-ND2
12.78
109.82
122.60
33
82
A
392
ARG
NE-CZ-NH2
12.74
107.74
119.20
40
55
A
137
GLN
OE1-CD-NE2
12.71
109.89
122.60
48
100
A
375
ASP
CA-CB-CG
12.70
125.30
112.60
71
72
A
72
GLN
OE1-CD-NE2
12.56
110.04
122.60
87
103
A
185
PHE
CA-CB-CG
12.51
126.31
113.80
168
72
A
265
GLN
OE1-CD-NE2
12.41
110.19
122.60
112
100
A
151
ARG
NE-CZ-NH2
12.40
130.36
119.20
160
45
A
178
PHE
CA-CB-CG
12.40
126.20
113.80
16
77
A
287
GLN
OE1-CD-NE2
12.38
110.22
122.60
83
97
A
399
ASN
OD1-CG-ND2
12.34
110.26
122.60
10
76
A
462
GLN
OE1-CD-NE2
12.28
110.32
122.60
72
107
A
557
GLN
OE1-CD-NE2
12.25
110.35
122.60
149
99
A
171
PHE
CA-CB-CG
12.20
126.00
113.80
102
72
A
230
PHE
CA-CB-CG
12.19
125.99
113.80
58
52
A
214
GLN
OE1-CD-NE2
12.17
110.43
122.60
111
103
A
302
ASN
OD1-CG-ND2
12.17
110.43
122.60
141
86
A
358
ARG
NE-CZ-NH2
12.14
130.12
119.20
202
67
A
289
ASN
OD1-CG-ND2
12.13
110.47
122.60
49
91
A
565
PHE
CA-CB-CG
12.07
125.87
113.80
146
78
A
493
ARG
NE-CZ-NH1
12.06
133.56
121.50
46
55
A
574
ASN
CA-CB-CG
12.04
124.64
112.60
149
53
A
398
GLN
OE1-CD-NE2
12.02
110.58
122.60
119
100
A
140
ASP
CA-CB-CG
11.99
124.59
112.60
202
79
A
530
GLN
OE1-CD-NE2
11.98
110.62
122.60
125
108
A
109
ASN
OD1-CG-ND2
11.97
110.63
122.60
173
81
A
20
ARG
NH1-CZ-NH2
11.97
103.74
119.30
147
50
A
338
GLN
OE1-CD-NE2
11.92
110.68
122.60
35
103
A
129
ASN
OD1-CG-ND2
11.90
110.70
122.60
52
97
A
378
HIS
CA-CB-CG
11.90
125.70
113.80
7
60
A
194
GLN
OE1-CD-NE2
11.89
110.71
122.60
155
105
A
276
ASN
CA-CB-CG
11.83
124.43
112.60
32
56
A
357
HIS
CA-CB-CG
11.81
101.99
113.80
97
66
A
264
GLN
OE1-CD-NE2
11.77
110.83
122.60
26
100
A
308
ASP
CA-CB-CG
11.75
124.35
112.60
42
66
A
116
PHE
CA-CB-CG
11.74
125.54
113.80
55
86
A
400
GLN
OE1-CD-NE2
11.74
110.86
122.60
138
103
A
456
GLN
OE1-CD-NE2
11.70
110.90
122.60
82
108
A
188
ASP
CA-CB-CG
11.66
124.26
112.60
135
67
A
368
PHE
CA-CB-CG
11.64
125.44
113.80
168
72
A
36
GLN
OE1-CD-NE2
11.62
110.98
122.60
125
112
A
314
ASN
OD1-CG-ND2
11.60
111.00
122.60
164
72
A
525
GLN
OE1-CD-NE2
11.60
111.00
122.60
92
106
A
438
GLN
OE1-CD-NE2
11.56
111.04
122.60
36
95
A
129
ASN
CA-CB-CG
11.55
124.15
112.60
113
56
A
240
ARG
NH1-CZ-NH2
11.53
104.31
119.30
159
40
A
515
GLN
OE1-CD-NE2
11.50
111.10
122.60
158
98
A
110
GLN
OE1-CD-NE2
11.47
111.13
122.60
22
104
A
527
HIS
CA-CB-CG
11.42
125.22
113.80
122
55
A
324
ASN
OD1-CG-ND2
11.42
111.18
122.60
191
77
A
126
PHE
CA-CB-CG
11.39
125.19
113.80
31
77
A
170
ASP
CA-CB-CG
11.38
123.98
112.60
122
60
A
103
ASP
CA-CB-CG
11.37
123.97
112.60
148
67
A
65
PHE
CA-CB-CG
11.36
125.16
113.80
88
62
A
238
PHE
CA-CB-CG
11.34
125.14
113.80
122
101
A
539
ARG
NE-CZ-NH2
11.33
129.40
119.20
198
48
A
477
GLN
OE1-CD-NE2
11.32
111.28
122.60
116
109
A
199
ASP
CA-CB-CG
11.28
123.88
112.60
196
77
A
405
ASP
CA-CB-CG
11.24
123.84
112.60
47
59
A
216
ASP
CA-CB-CG
11.23
123.83
112.60
201
57
A
537
ASN
OD1-CG-ND2
11.22
111.38
122.60
19
85
A
236
PHE
CA-CB-CG
11.22
125.02
113.80
98
72

Too-close contacts ?

The following all-atom clashscore is based on a MolProbity analysis. All-atom clashscore is defined as the number of clashes found per 1000 atoms (including hydrogen atoms). The table below contains clashscores for all atomic models in this entry.

Model ID Clash score Number of clashes
1
2.87
27
2
2.76
26
3
3.72
35
4
2.98
28
5
3.51
33
6
1.06
10
7
0.64
6
8
0.85
8
9
3.19
30
10
1.17
11
11
1.06
10
12
1.38
13
13
2.98
28
14
0.96
9
15
1.60
15
16
0.53
5
17
1.70
16
18
0.53
5
19
3.30
31
20
4.04
38
21
3.72
35
22
3.30
31
23
1.28
12
24
2.87
27
25
1.81
17
26
1.49
14
27
1.28
12
28
1.49
14
29
0.96
9
30
2.02
19
31
1.49
14
32
1.49
14
33
1.06
10
34
1.06
10
35
1.06
10
36
0.74
7
37
1.06
10
38
1.17
11
39
0.85
8
40
1.28
12
41
2.87
27
42
1.06
10
43
1.38
13
44
2.23
21
45
1.60
15
46
1.06
10
47
1.06
10
48
1.06
10
49
0.64
6
50
3.72
35
51
1.06
10
52
0.74
7
53
2.98
28
54
4.36
41
55
4.15
39
56
3.72
35
57
0.85
8
58
0.64
6
59
1.38
13
60
1.49
14
61
0.96
9
62
0.64
6
63
0.96
9
64
0.85
8
65
0.96
9
66
1.06
10
67
2.87
27
68
2.13
20
69
4.36
41
70
1.06
10
71
0.85
8
72
0.53
5
73
1.06
10
74
2.02
19
75
4.04
38
76
1.49
14
77
0.74
7
78
0.64
6
79
1.60
15
80
0.85
8
81
0.96
9
82
0.85
8
83
1.17
11
84
4.68
44
85
1.28
12
86
0.96
9
87
2.34
22
88
3.40
32
89
2.98
28
90
1.28
12
91
2.76
26
92
0.85
8
93
1.06
10
94
3.51
33
95
1.49
14
96
3.30
31
97
0.64
6
98
3.72
35
99
1.49
14
100
1.38
13
101
1.38
13
102
0.96
9
103
1.06
10
104
2.13
20
105
0.64
6
106
0.21
2
107
1.60
15
108
1.49
14
109
1.60
15
110
1.17
11
111
1.17
11
112
0.74
7
113
1.70
16
114
1.38
13
115
0.96
9
116
1.17
11
117
1.06
10
118
0.32
3
119
0.74
7
120
0.64
6
121
1.60
15
122
0.74
7
123
1.17
11
124
1.17
11
125
0.74
7
126
1.49
14
127
0.43
4
128
0.53
5
129
0.96
9
130
1.28
12
131
1.38
13
132
1.38
13
133
0.96
9
134
1.17
11
135
1.06
10
136
0.96
9
137
2.02
19
138
1.17
11
139
1.06
10
140
1.38
13
141
0.64
6
142
3.62
34
143
1.38
13
144
0.85
8
145
1.28
12
146
1.28
12
147
1.60
15
148
1.17
11
149
0.53
5
150
0.64
6
151
1.06
10
152
1.49
14
153
3.83
36
154
0.85
8
155
1.38
13
156
0.64
6
157
1.17
11
158
1.28
12
159
0.64
6
160
1.49
14
161
0.21
2
162
0.96
9
163
0.64
6
164
1.38
13
165
3.51
33
166
1.38
13
167
3.72
35
168
3.62
34
169
1.60
15
170
0.64
6
171
0.96
9
172
1.17
11
173
0.96
9
174
1.38
13
175
1.06
10
176
2.55
24
177
3.40
32
178
1.06
10
179
1.17
11
180
2.34
22
181
3.51
33
182
3.30
31
183
5.21
49
184
3.30
31
185
2.87
27
186
0.74
7
187
1.81
17
188
3.30
31
189
0.96
9
190
1.06
10
191
1.49
14
192
1.49
14
193
1.91
18
194
3.62
34
195
3.93
37
196
2.55
24
197
0.43
4
198
1.28
12
199
0.74
7
200
3.93
37
201
0.96
9
202
1.17
11
203
1.81
17
204
1.38
13
205
1.28
12
206
0.64
6

There are 3198 clashes. The table below contains the detailed list of all clashes based on a MolProbity analysis. Bad clashes are >= 0.4 Angstrom. The output is limited to 100 rows.

Atom 1 Atom 2 Clash(Å) Model ID (Worst) Models (Total)
A:296:LEU:HD12
A:315:ALA:HB1
0.90
200
2
A:353:LEU:HD11
A:395:PHE:CZ
0.89
22
6
A:14:ILE:HD13
A:21:LEU:HD21
0.83
50
8
A:44:VAL:HG22
A:45:GLY:H
0.81
180
18
A:38:MET:HE2
A:293:LEU:HD21
0.79
41
3
A:55:MET:HE2
A:95:LEU:HG
0.78
176
3
A:339:MET:HE1
A:356:LEU:HD21
0.77
139
1
A:247:LEU:H
A:247:LEU:HD23
0.77
189
1
A:14:ILE:HD12
A:21:LEU:HD11
0.77
196
2
A:80:MET:SD
A:94:VAL:HG21
0.77
182
6
A:38:MET:HE1
A:293:LEU:HD22
0.76
19
8
A:38:MET:HE1
A:293:LEU:HD21
0.76
181
8
A:422:VAL:HG21
A:471:MET:HE1
0.75
137
1
A:282:LEU:HD12
A:283:SER:H
0.74
44
2
A:414:ILE:H
A:414:ILE:HD12
0.73
27
1
A:180:TRP:HE1
A:182:LEU:HD22
0.72
89
1
A:7:MET:HE2
A:61:LYS:HE3
0.72
41
1
A:57:LYS:HE3
A:266:VAL:HG21
0.71
120
1
A:152:ILE:HG21
A:171:PHE:HE2
0.70
50
1
A:407:CYS:HB3
A:460:ILE:HG21
0.70
168
6
A:57:LYS:HA
A:57:LYS:HE3
0.70
159
1
A:122:LEU:HD13
A:296:LEU:HD22
0.70
94
2
A:336:GLU:HA
A:391:LYS:HE2
0.69
2
1
A:122:LEU:HD11
A:293:LEU:HD12
0.69
94
3
A:13:LEU:HD13
A:14:ILE:HG23
0.69
172
2
A:114:TRP:CZ2
A:304:ILE:HG21
0.69
89
16
A:80:MET:HE3
A:94:VAL:HG21
0.69
2
11
A:46:LEU:H
A:46:LEU:HD13
0.68
157
1
A:410:LEU:HD11
A:414:ILE:HD12
0.68
139
1
A:55:MET:HE2
A:95:LEU:HB3
0.68
3
1
A:353:LEU:HD11
A:395:PHE:CE1
0.68
20
4
A:174:PHE:CE2
A:312:MET:HE2
0.68
93
1
A:14:ILE:HD11
A:78:ILE:HB
0.68
67
6
A:258:LEU:HD21
A:262:PHE:CD2
0.68
53
7
A:330:LYS:HE2
A:334:HIS:CE1
0.68
176
1
A:31:LEU:HD11
A:80:MET:HE3
0.68
183
1
A:122:LEU:HD13
A:296:LEU:HD12
0.68
193
1
A:40:VAL:HG23
A:94:VAL:HG13
0.67
141
6
A:152:ILE:HG21
A:171:PHE:CE2
0.67
50
7
A:317:LEU:HD22
A:376:VAL:HB
0.67
53
1
A:79:TRP:CG
A:80:MET:H
0.67
194
10
A:121:LEU:HD13
A:312:MET:HG2
0.67
4
1
A:552:LEU:C
A:552:LEU:HD13
0.67
169
6
A:291:PRO:HB2
A:322:ILE:HD12
0.67
134
1
A:120:VAL:HG11
A:175:PHE:CE2
0.66
101
1
A:180:TRP:CD1
A:235:CYS:HG
0.66
45
2
A:342:LYS:HD2
A:356:LEU:HD13
0.66
155
1
A:135:ASN:CG
A:136:GLN:H
0.66
48
1
A:38:MET:HE3
A:40:VAL:HB
0.65
54
5
A:426:ILE:H
A:426:ILE:HD12
0.65
7
1
A:46:LEU:H
A:46:LEU:HD12
0.65
15
2
A:185:PHE:CD2
A:237:VAL:HG23
0.64
24
16
A:177:ASP:HA
A:230:PHE:CE1
0.64
177
12
A:114:TRP:CD1
A:300:TYR:HH
0.64
28
1
A:373:PHE:CZ
A:374:LYS:HE3
0.64
129
1
A:1:MET:HE3
A:2:ALA:H
0.64
153
1
A:316:VAL:HG13
A:317:LEU:HD22
0.64
3
2
A:153:ARG:HH21
A:167:ASP:HB2
0.64
183
1
A:139:MET:HE1
A:219:PHE:CZ
0.64
91
1
A:202:LEU:HD22
A:235:CYS:HB2
0.64
167
3
A:68:GLY:H
A:74:HIS:CE1
0.63
112
6
A:208:LEU:N
A:208:LEU:HD22
0.63
110
2
A:425:GLY:HA2
A:478:THR:HG23
0.63
22
1
A:67:LEU:H
A:67:LEU:HD22
0.63
45
2
A:178:PHE:CZ
A:226:ILE:HD11
0.63
9
1
A:288:VAL:HG23
A:292:ARG:HD2
0.63
176
2
A:146:THR:HG22
A:225:CYS:HB2
0.63
195
3
A:59:ALA:HB2
A:81:TRP:HE1
0.63
168
5
A:77:GLY:HA2
A:115:ILE:HD13
0.63
197
1
A:404:SER:HB3
A:460:ILE:HD13
0.63
67
1
A:295:SER:O
A:299:THR:HG23
0.63
110
2
A:88:LYS:HE3
A:91:HIS:CD2
0.63
114
1
A:82:CYS:HB2
A:94:VAL:HG23
0.63
124
1
A:269:PHE:CE1
A:273:ILE:HD11
0.63
146
1
A:80:MET:HE2
A:94:VAL:HG11
0.63
195
2
A:557:GLN:CD
A:562:LYS:HE2
0.63
203
1
A:253:LEU:HD13
A:257:GLU:HG2
0.63
5
1
A:7:MET:HE1
A:61:LYS:HG3
0.63
153
1
A:567:LYS:HE3
A:571:ILE:HD11
0.63
156
1
A:414:ILE:HG21
A:447:TYR:CD2
0.63
187
1
A:356:LEU:C
A:356:LEU:HD13
0.63
27
5
A:55:MET:HE3
A:97:ASP:HB2
0.63
21
2
A:7:MET:HG3
A:81:TRP:CH2
0.63
33
1
A:300:TYR:CE1
A:310:PRO:HG2
0.63
55
1
A:206:LEU:HD22
A:223:ARG:HG2
0.62
183
1
A:224:LEU:C
A:224:LEU:HD13
0.62
11
15
A:178:PHE:CD2
A:233:LYS:HE2
0.62
58
3
A:410:LEU:O
A:414:ILE:HG22
0.62
165
3
A:208:LEU:HD21
A:220:ASN:HB2
0.62
196
1
A:215:LYS:HA
A:215:LYS:HE2
0.62
92
1
A:250:LEU:HD11
A:258:LEU:HD13
0.62
196
1
A:282:LEU:CD1
A:292:ARG:HH11
0.62
199
1
A:81:TRP:C
A:94:VAL:HG23
0.62
182
12
A:34:ILE:HD11
A:92:ILE:HD13
0.62
44
3
A:87:LYS:HA
A:87:LYS:HE3
0.62
24
2
A:120:VAL:HG23
A:175:PHE:CD2
0.62
188
2
A:121:LEU:HD23
A:300:TYR:CD2
0.62
188
3
A:171:PHE:CE1
A:229:PHE:CE1
0.62
55
3
A:414:ILE:N
A:414:ILE:HD12
0.62
27
1
A:38:MET:HE1
A:293:LEU:HD11
0.62
55
2

Torsion angles: Protein backbone ?

In the following table, Ramachandran outliers are listed. The Analysed column shows the number of residues for which the backbone conformation was analysed.

Model ID Analysed Favored Allowed Outliers
1
581
527
40
14
2
581
512
51
18
3
581
510
57
14
4
581
512
59
10
5
581
513
58
10
6
581
520
54
7
7
581
530
42
9
8
581
525
46
10
9
581
514
53
14
10
581
515
61
5
11
581
531
39
11
12
581
533
41
7
13
581
504
60
17
14
581
531
43
7
15
581
531
45
5
16
581
527
46
8
17
581
535
38
8
18
581
524
49
8
19
581
522
52
7
20
581
505
57
19
21
581
505
60
16
22
581
512
53
16
23
581
528
39
14
24
581
521
48
12
25
581
511
57
13
26
581
526
46
9
27
581
524
48
9
28
581
536
38
7
29
581
527
45
9
30
581
518
51
12
31
581
527
44
10
32
581
536
39
6
33
581
513
52
16
34
581
521
49
11
35
581
523
50
8
36
581
524
50
7
37
581
528
46
7
38
581
531
43
7
39
581
519
52
10
40
581
529
45
7
41
581
526
42
13
42
581
520
45
16
43
581
526
45
10
44
581
529
35
17
45
581
529
45
7
46
581
516
56
9
47
581
535
44
2
48
581
529
49
3
49
581
519
54
8
50
581
529
39
13
51
581
528
42
11
52
581
536
42
3
53
581
496
68
17
54
581
499
67
15
55
581
524
45
12
56
581
521
44
16
57
581
529
44
8
58
581
511
63
7
59
581
525
47
9
60
581
506
62
13
61
581
513
57
11
62
581
527
47
7
63
581
526
45
10
64
581
520
56
5
65
581
515
53
13
66
581
530
39
12
67
581
534
35
12
68
581
526
44
11
69
581
515
57
9
70
581
538
36
7
71
581
536
35
10
72
581
528
44
9
73
581
519
50
12
74
581
521
48
12
75
581
526
44
11
76
581
524
46
11
77
581
528
41
12
78
581
532
46
3
79
581
521
46
14
80
581
522
51
8
81
581
527
47
7
82
581
531
45
5
83
581
518
51
12
84
581
513
56
12
85
581
528
49
4
86
581
534
40
7
87
581
502
65
14
88
581
528
44
9
89
581
535
36
10
90
581
535
40
6
91
581
516
52
13
92
581
511
56
14
93
581
530
39
12
94
581
528
46
7
95
581
511
60
10
96
581
524
44
13
97
581
515
56
10
98
581
521
50
10
99
581
535
34
12
100
581
528
43
10
101
581
527
45
9
102
581
527
46
8
103
581
539
33
9
104
581
514
52
15
105
581
528
47
6
106
581
536
35
10
107
581
543
34
4
108
581
539
38
4
109
581
528
44
9
110
581
526
47
8
111
581
530
45
6
112
581
524
51
6
113
581
527
48
6
114
581
520
52
9
115
581
509
55
17
116
581
508
65
8
117
581
506
65
10
118
581
529
45
7
119
581
530
40
11
120
581
524
50
7
121
581
533
34
14
122
581
538
36
7
123
581
527
49
5
124
581
528
45
8
125
581
528
47
6
126
581
544
28
9
127
581
531
41
9
128
581
541
35
5
129
581
537
37
7
130
581
520
51
10
131
581
526
49
6
132
581
537
39
5
133
581
533
36
12
134
581
533
43
5
135
581
531
41
9
136
581
526
50
5
137
581
524
51
6
138
581
519
56
6
139
581
530
44
7
140
581
522
47
12
141
581
517
54
10
142
581
522
51
8
143
581
524
51
6
144
581
538
35
8
145
581
526
51
4
146
581
534
37
10
147
581
530
39
12
148
581
536
37
8
149
581
522
51
8
150
581
542
37
2
151
581
532
39
10
152
581
518
50
13
153
581
533
41
7
154
581
531
38
12
155
581
531
40
10
156
581
530
42
9
157
581
537
35
9
158
581
522
53
6
159
581
529
40
12
160
581
521
50
10
161
581
529
41
11
162
581
527
44
10
163
581
532
40
9
164
581
514
58
9
165
581
499
74
8
166
581
531
46
4
167
581
537
39
5
168
581
534
40
7
169
581
540
34
7
170
581
531
45
5
171
581
536
36
9
172
581
533
40
8
173
581
514
55
12
174
581
528
40
13
175
581
528
49
4
176
581
536
36
9
177
581
507
63
11
178
581
527
46
8
179
581
529
47
5
180
581
522
51
8
181
581
504
68
9
182
581
509
56
16
183
581
505
58
18
184
581
512
51
18
185
581
519
54
8
186
581
518
52
11
187
581
536
31
14
188
581
527
43
11
189
581
529
42
10
190
581
519
53
9
191
581
524
47
10
192
581
533
44
4
193
581
538
30
13
194
581
528
43
10
195
581
503
63
15
196
581
536
35
10
197
581
530
38
13
198
581
526
46
9
199
581
532
39
10
200
581
514
54
13
201
581
506
63
12
202
581
541
33
7
203
581
533
40
8
204
581
532
42
7
205
581
536
39
6
206
581
537
40
4

There are 314 unique backbone outliers. Detailed list of outliers are tabulated below. The output is limited to 100 rows.

Chain Res Type Models (Total)
A
165
VAL
121
A
12
CYS
70
A
108
ASP
58
A
565
PHE
50
A
452
ARG
45
A
176
PRO
40
A
80
MET
30
A
109
ASN
30
A
374
LYS
30
A
63
LYS
28
A
64
GLY
27
A
48
ARG
26
A
161
ASN
24
A
71
VAL
23
A
239
ASP
23
A
241
PRO
23
A
285
GLY
22
A
428
SER
22
A
10
PRO
21
A
134
ILE
21
A
564
GLY
21
A
426
ILE
19
A
34
ILE
18
A
193
GLY
17
A
231
PRO
17
A
49
THR
16
A
68
GLY
16
A
242
VAL
16
A
11
MET
15
A
255
ASP
14
A
378
HIS
14
A
77
GLY
13
A
189
LEU
13
A
283
SER
13
A
346
PRO
13
A
50
GLY
12
A
232
LYS
12
A
280
LYS
12
A
290
GLY
12
A
373
PHE
12
A
457
ALA
12
A
480
GLN
12
A
5
ILE
11
A
9
GLY
11
A
156
SER
11
A
233
LYS
11
A
372
SER
11
A
425
GLY
11
A
432
GLY
11
A
172
VAL
10
A
186
SER
10
A
375
ASP
10
A
451
PRO
10
A
566
GLN
10
A
18
ASN
9
A
69
SER
9
A
110
GLN
9
A
144
TYR
9
A
279
THR
9
A
318
ALA
9
A
320
ALA
9
A
468
LYS
9
A
35
THR
8
A
99
GLU
8
A
152
ILE
8
A
192
ASP
8
A
310
PRO
8
A
377
ASP
8
A
477
GLN
8
A
481
THR
8
A
3
SER
7
A
7
MET
7
A
90
GLY
7
A
102
GLY
7
A
206
LEU
7
A
211
GLY
7
A
277
SER
7
A
284
GLY
7
A
455
ILE
7
A
483
THR
7
A
32
SER
6
A
51
LYS
6
A
60
GLY
6
A
70
THR
6
A
73
SER
6
A
143
TYR
6
A
154
SER
6
A
158
PRO
6
A
185
PHE
6
A
286
ILE
6
A
316
VAL
6
A
322
ILE
6
A
343
VAL
6
A
347
THR
6
A
376
VAL
6
A
413
VAL
6
A
456
GLN
6
A
6
HIS
5
A
66
SER
5
A
74
HIS
5

Torsion angles : Protein sidechains ?
In the following table, sidechain rotameric outliers are listed. The Analysed column shows the number of residues for which the sidechain conformation was analysed.

Model ID Analysed Favored Allowed Outliers
1
524
335
87
102
2
524
341
83
100
3
524
325
95
104
4
524
325
97
102
5
524
325
97
102
6
524
449
46
29
7
524
444
57
23
8
524
437
65
22
9
524
339
83
102
10
524
447
50
27
11
524
459
48
17
12
524
440
61
23
13
524
317
100
107
14
524
437
72
15
15
524
440
60
24
16
524
452
54
18
17
524
457
51
16
18
524
456
48
20
19
524
325
85
114
20
524
307
99
118
21
524
325
93
106
22
524
340
90
94
23
524
461
40
23
24
524
324
96
104
25
524
445
55
24
26
524
451
56
17
27
524
436
54
34
28
524
446
58
20
29
524
462
43
19
30
524
329
93
102
31
524
439
55
30
32
524
460
46
18
33
524
407
87
30
34
524
454
52
18
35
524
450
47
27
36
524
448
53
23
37
524
451
54
19
38
524
451
47
26
39
524
450
51
23
40
524
434
61
29
41
524
325
109
90
42
524
460
42
22
43
524
423
64
37
44
524
334
89
101
45
524
467
38
19
46
524
417
67
40
47
524
441
53
30
48
524
453
55
16
49
524
466
44
14
50
524
343
86
95
51
524
454
49
21
52
524
442
53
29
53
524
331
89
104
54
524
319
95
110
55
524
359
81
84
56
524
326
91
107
57
524
450
54
20
58
524
451
55
18
59
524
449
49
26
60
524
424
61
39
61
524
421
54
49
62
524
448
54
22
63
524
453
47
24
64
524
431
67
26
65
524
433
63
28
66
524
448
53
23
67
524
326
95
103
68
524
414
66
44
69
524
336
79
109
70
524
454
51
19
71
524
465
44
15
72
524
463
50
11
73
524
436
67
21
74
524
350
89
85
75
524
321
102
101
76
524
446
58
20
77
524
463
46
15
78
524
457
50
17
79
524
468
41
15
80
524
457
48
19
81
524
465
38
21
82
524
448
57
19
83
524
459
49
16
84
524
334
99
91
85
524
441
60
23
86
524
468
36
20
87
524
317
87
120
88
524
353
65
106
89
524
337
86
101
90
524
450
54
20
91
524
418
66
40
92
524
428
62
34
93
524
448
52
24
94
524
343
88
93
95
524
460
49
15
96
524
347
80
97
97
524
439
60
25
98
524
350
81
93
99
524
442
61
21
100
524
455
53
16
101
524
456
51
17
102
524
418
72
34
103
524
451
52
21
104
524
417
65
42
105
524
461
42
21
106
524
446
57
21
107
524
457
48
19
108
524
457
42
25
109
524
448
59
17
110
524
457
47
20
111
524
443
61
20
112
524
465
37
22
113
524
438
57
29
114
524
456
47
21
115
524
441
53
30
116
524
440
53
31
117
524
449
52
23
118
524
459
45
20
119
524
465
47
12
120
524
438
65
21
121
524
455
56
13
122
524
470
38
16
123
524
461
45
18
124
524
448
53
23
125
524
456
48
20
126
524
461
43
20
127
524
456
60
8
128
524
468
41
15
129
524
456
52
16
130
524
455
51
18
131
524
455
51
18
132
524
451
51
22
133
524
442
60
22
134
524
445
45
34
135
524
454
51
19
136
524
460
50
14
137
524
454
47
23
138
524
456
49
19
139
524
450
55
19
140
524
452
53
19
141
524
436
55
33
142
524
337
72
115
143
524
430
70
24
144
524
466
39
19
145
524
437
69
18
146
524
455
51
18
147
524
442
55
27
148
524
441
50
33
149
524
450
60
14
150
524
466
43
15
151
524
436
58
30
152
524
451
48
25
153
524
345
80
99
154
524
446
53
25
155
524
427
67
30
156
524
456
52
16
157
524
430
60
34
158
524
437
57
30
159
524
426
68
30
160
524
442
55
27
161
524
458
51
15
162
524
430
61
33
163
524
450
60
14
164
524
431
66
27
165
524
318
98
108
166
524
457
49
18
167
524
346
78
100
168
524
356
79
89
169
524
449
53
22
170
524
447
60
17
171
524
450
54
20
172
524
453
55
16
173
524
459
43
22
174
524
436
63
25
175
524
429
63
32
176
524
336
90
98
177
524
333
96
95
178
524
450
57
17
179
524
461
46
17
180
524
435
65
24
181
524
320
91
113
182
524
327
94
103
183
524
300
101
123
184
524
333
97
94
185
524
347
87
90
186
524
447
52
25
187
524
336
96
92
188
524
331
86
107
189
524
466
38
20
190
524
436
57
31
191
524
453
45
26
192
524
448
58
18
193
524
416
71
37
194
524
332
96
96
195
524
321
102
101
196
524
350
96
78
197
524
463
46
15
198
524
430
62
32
199
524
452
52
20
200
524
318
98
108
201
524
426
64
34
202
524
455
48
21
203
524
429
64
31
204
524
447
49
28
205
524
421
68
35
206
524
430
63
31

There are 515 unique sidechain outliers. Detailed list of outliers are tabulated below. The output is limited to 100 rows.

Chain Res Type Models (Total)
A
292
ARG
87
A
294
GLU
81
A
13
LEU
75
A
40
VAL
69
A
528
LEU
69
A
114
TRP
67
A
453
LYS
63
A
127
VAL
60
A
41
VAL
57
A
552
LEU
56
A
233
LYS
55
A
531
LEU
54
A
435
LEU
53
A
78
ILE
52
A
223
ARG
51
A
317
LEU
51
A
350
LEU
51
A
482
LEU
51
A
39
VAL
50
A
229
PHE
50
A
208
LEU
49
A
579
LEU
49
A
46
LEU
47
A
67
LEU
47
A
165
VAL
47
A
379
LEU
47
A
274
PHE
46
A
384
LEU
46
A
95
LEU
45
A
543
LEU
45
A
561
LEU
43
A
151
ARG
42
A
183
ARG
42
A
356
LEU
42
A
131
ILE
41
A
506
LEU
41
A
134
ILE
40
A
61
LYS
39
A
265
GLN
39
A
391
LYS
39
A
14
ILE
38
A
406
ARG
38
A
224
LEU
37
A
226
ILE
37
A
298
LEU
37
A
354
LEU
37
A
443
LEU
37
A
293
LEU
36
A
54
LEU
35
A
143
TYR
35
A
309
LEU
35
A
465
LEU
35
A
542
LEU
35
A
101
LEU
34
A
121
LEU
34
A
145
VAL
34
A
92
ILE
33
A
129
ASN
33
A
266
VAL
33
A
282
LEU
33
A
155
LYS
32
A
175
PHE
32
A
237
VAL
32
A
550
LEU
32
A
80
MET
31
A
179
VAL
31
A
247
LEU
31
A
554
LEU
31
A
4
GLU
30
A
51
LYS
30
A
55
MET
30
A
120
VAL
30
A
187
LEU
30
A
322
ILE
30
A
330
LYS
30
A
374
LYS
30
A
48
ARG
29
A
115
ILE
29
A
153
ARG
29
A
162
GLU
29
A
288
VAL
29
A
413
VAL
29
A
560
LEU
29
A
5
ILE
28
A
220
ASN
28
A
251
GLU
28
A
367
VAL
28
A
34
ILE
27
A
28
LEU
26
A
56
ASN
26
A
104
VAL
26
A
182
LEU
26
A
286
ILE
26
A
357
HIS
26
A
427
TYR
26
A
475
ILE
26
A
565
PHE
26
A
58
LEU
25
A
180
TRP
25
A
426
ILE
25

PrISM precision analysis ?
Regions of low
high precision, defined as the variability among the models that satisfy the input data and calculated as the density-weighted root mean-square fluctuation (RMSF) from the bead/atom center of density, annotated and visualized using PrISM. The per-bead precision is computed from the deposited ensemble of superposed integrative models. High- and low-precision regions are then determined by clustering beads of similar precision based on their proximity in the structure. Only coarse-grained beads (or CA atoms for atomic models) of deposited models are used for assessment and visualization, and three projections for each representative model are generated.

PrISM analysis for Ensemble 1 (models deposited/total: 100/100).

.

PrISM analysis for Ensemble 2 (models deposited/total: 106/106).

.