2.1. Ensemble information?
This entry consists of 0 distinct ensemble.
2.2. Representation ?
This entry has 1 representation(s).
| ID | Model(s) | Entity ID | Molecule name | Chain(s) [auth] | Total residues | Rigid segments | Flexible segments | Model coverage/ Starting model coverage (%) |
Scale |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | 1 | 16Srna | A | 1530 | 1-754, 770-776, 781-785, 790-796, 800-886, 889-893, 899-1507, 1517-1530 | 755-769, 777-780, 786-789, 797-799, 887-888, 894-898, 1508-1516 |
100.00
/ 100.00 |
Atomic |
| 2 | ksga | B [V] | 252 | 3-97, 106, 108-123, 129-130, 132-136, 140, 145-161, 163-166, 174-197, 213-214, 216-228, 236-252 | 1-2, 98-105, 107, 124-128, 131, 137-139, 141-144, 162, 167-173, 198-212, 215, 229-235 |
100.00
/ 100.00 |
Atomic |
2.3. Datasets used for modeling ?
There are 4 unique datasets used to build the models in this entry.| ID | Dataset type | Database name | Data access code |
|---|---|---|---|
|
1
|
Experimental model
|
PDB
|
|
|
2
|
Mutagenesis data
|
Not available
|
|
|
3
|
3DEM volume
|
EMDB
|
|
|
4
|
DNA footprinting data
|
Not available
|
2.4. Methodology and software?
This entry is a result of 1 distinct protocol.| Step number | Protocol ID | Method name | Method type | Method description | Number of computed models | Multi state modeling | Multi scale modeling |
|---|---|---|---|---|---|---|---|
|
1
|
1
|
Rigid-body minimization
|
Rigid-body minimization in HADDOCK (it0)
|
Not available
|
10000
|
False
|
False
|
|
2
|
1
|
Simulated annealing
|
Semi-flexible SA in HADDOCK (it1)
|
Not available
|
400
|
False
|
False
|
| ID | Software name | Software version | Software classification | Software location |
|---|---|---|---|---|
|
1
|
2.30
|
molecular docking
|
||
|
2
|
2.00
|
em fitter
|