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PDB-IHM

System for Archiving Integrative Structures

Ensemble information?

This entry consists of 1 distinct ensemble.

Summary?

This entry consists of 1 model(s). A total of 21 datasets were used to build this entry.

Representation ?

This entry has 1 representation(s).

ID Model(s) Entity ID Molecule name Chain(s) [auth] Total residues Rigid segments Flexible segments Model coverage/
Starting model coverage
(%)		 Scale
1 1 1 Sec03 A 1336 731-884, 924-956, 991-1137, 1157-1223, 1242-1333 1-730, 885-923, 957-990, 1138-1156, 1224-1241, 1334-1336 100.00 /
36.90 		Multiscale: Coarse-grained: 1 - 50 residue(s) per bead
2 Sec05 B 971 232-327, 350-371, 457-501, 529-556, 627-658, 686-786, 806-921, 945-957 1-231, 328-349, 372-456, 502-528, 557-626, 659-685, 787-805, 922-944, 958-971 100.00 /
46.65 		Multiscale: Coarse-grained: 1 - 50 residue(s) per bead
3 Sec06 C 805 411-805 1-410 100.00 /
49.07 		Multiscale: Coarse-grained: 1 - 50 residue(s) per bead
4 Sec08 D 1065 159-230, 326-361, 393-420, 549-570, 588-610, 631-648, 660-672, 690-698, 745-772, 825-972 1-158, 231-325, 362-392, 421-548, 571-587, 611-630, 649-659, 673-689, 699-744, 773-824, 973-1065 100.00 /
37.28 		Multiscale: Coarse-grained: 1 - 50 residue(s) per bead
5 Sec10 E 871 230-280, 319-399, 414-460, 568-624, 639-864 1-229, 281-318, 400-413, 461-567, 625-638, 865-871 100.00 /
53.04 		Multiscale: Coarse-grained: 1 - 50 residue(s) per bead
6 Sec15 F 910 474-525, 566-639, 663-685, 703-769 1-473, 526-565, 640-662, 686-702, 770-910 100.00 /
23.74 		Multiscale: Coarse-grained: 1 - 50 residue(s) per bead
7 Exo70 G 623 67-116, 121-221, 234-295, 301-414, 419-623 1-66, 117-120, 222-233, 296-300, 415-418 100.00 /
85.39 		Multiscale: Coarse-grained: 1 - 50 residue(s) per bead
8 Exo84 H 753 344-451, 525-570, 578-647, 650-711, 715-753 1-343, 452-524, 571-577, 648-649, 712-714 100.00 /
43.16 		Multiscale: Coarse-grained: 1 - 50 residue(s) per bead

Datasets used for modeling ?

There are 21 unique datasets used to build the models in this entry.
ID Dataset type Database name Data access code
1
Experimental model
PDB
2
Comparative model
Zenodo
3
Experimental model
PDB
4
Comparative model
Zenodo
5
Experimental model
PDB
6
Comparative model
Zenodo
7
Experimental model
PDB
8
Comparative model
Zenodo
9
Experimental model
PDB
10
Comparative model
Zenodo
11
Experimental model
PDB
12
Comparative model
Zenodo
13
Comparative model
Zenodo
14
Experimental model
PDB
15
Experimental model
PDB
16
Comparative model
Zenodo
17
Experimental model
PDB
18
Crosslinking-MS data
Zenodo
19
Crosslinking-MS data
Zenodo
20
3DEM volume
EMDB
21
3DEM volume
Zenodo

Methodology and software?

This entry is a result of 1 distinct protocol.
Step number Protocol ID Method name Method type Method description Number of computed models Multi state modeling Multi scale modeling
1
1
Sampling
Replica exchange monte carlo
None
200000
False
True
There are 3 software packages reported in this entry.
ID Software name Software version Software classification Software location
1
2.13.0
integrative model building
2
2.13.0
integrative model building
3
SVN
comparative modeling