2.1. Ensemble information?
This entry consists of 0 distinct ensemble.
2.2. Representation ?
This entry has 1 representation(s).
| ID | Model(s) | Entity ID | Molecule name | Chain(s) [auth] | Total residues | Rigid segments | Flexible segments | Model coverage/ Starting model coverage (%) |
Scale |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | 8 | Dyn2 | 91 | 92 | - | 1-92 |
100.00
/ 100.00 |
Atomic |
| 92 | |||||||||
| 12 | Nic96 | A1 | 839 | - | 1-839 |
100.00
/ 100.00 |
Atomic | ||
| A2 | |||||||||
| A3 | |||||||||
| A4 | |||||||||
| 13 | Nup188 | B1 | 1655 | - | 1-1655 |
100.00
/ 100.00 |
Atomic | ||
| B2 | |||||||||
| 17 | Nup192 | C1 | 1683 | - | 1-1683 |
100.00
/ 100.00 |
Atomic | ||
| C2 | |||||||||
| 14 | Nup157 | D1 | 1391 | - | 1-1391 |
100.00
/ 100.00 |
Atomic | ||
| D2 | |||||||||
| 15 | Nup57 | H1 | 541 | - | 1-541 |
100.00
/ 100.00 |
Atomic | ||
| H2 | |||||||||
| H3 | |||||||||
| H4 | |||||||||
| 16 | Nup49 | I1 | 472 | - | 1-472 |
100.00
/ 100.00 |
Atomic | ||
| I2 | |||||||||
| I3 | |||||||||
| I4 | |||||||||
| 11 | Nsp1 | J1 | 823 | - | 1-823 |
100.00
/ 100.00 |
Atomic | ||
| J2 | |||||||||
| J3 | |||||||||
| J4 | |||||||||
| J5 | |||||||||
| J6 | |||||||||
| 1 | Nup133 | K1 | 1157 | - | 1-1157 |
100.00
/ 100.00 |
Atomic | ||
| K2 | |||||||||
| 2 | Nup84 | L1 | 726 | - | 1-726 |
100.00
/ 100.00 |
Atomic | ||
| L2 | |||||||||
| 3 | Nup145c | M1 | 712 | - | 1-712 |
100.00
/ 100.00 |
Atomic | ||
| M2 | |||||||||
| 4 | Sec13 | N1 | 297 | - | 1-297 |
100.00
/ 100.00 |
Atomic | ||
| N2 | |||||||||
| 5 | Seh1 | O1 | 349 | - | 1-349 |
100.00
/ 100.00 |
Atomic | ||
| O2 | |||||||||
| 6 | Nup85 | P1 | 744 | - | 1-744 |
100.00
/ 100.00 |
Atomic | ||
| P2 | |||||||||
| 7 | Nup120 | R1 | 1037 | - | 1-1037 |
100.00
/ 100.00 |
Atomic | ||
| R2 | |||||||||
| 10 | Nup159 | V1 | 1460 | - | 1-1460 |
100.00
/ 100.00 |
Atomic | ||
| V2 | |||||||||
| 9 | Nup82 | W1 | 713 | - | 1-713 |
100.00
/ 100.00 |
Atomic | ||
| W2 | |||||||||
| 18 | Nup170 | d1 | 1502 | - | 1-1502 |
100.00
/ 100.00 |
Atomic | ||
| d2 |
2.3. Datasets used for modeling ?
There are 10 unique datasets used to build the models in this entry.| ID | Dataset type | Database name | Data access code |
|---|---|---|---|
|
1
|
3DEM volume
|
EMDB
|
|
|
2
|
3DEM volume
|
Zenodo
|
|
|
3
|
3DEM volume
|
Zenodo
|
|
|
4
|
Experimental model
|
PDB
|
|
|
5
|
Comparative model
|
Zenodo
|
|
|
6
|
Comparative model
|
Zenodo
|
|
|
7
|
Integrative model
|
PDB
|
|
|
8
|
Integrative model
|
PDB
|
|
|
9
|
Integrative model
|
PDB
|
|
|
10
|
Other
|
Not available
|
2.4. Methodology and software?
This entry is a result of 1 distinct protocol.| Step number | Protocol ID | Method name | Method type | Method description | Number of computed models | Multi state modeling | Multi scale modeling |
|---|---|---|---|---|---|---|---|
|
1
|
1
|
Systematic fitting to EM maps with Global search from UCSF Chimera
|
Systematic fitting of CR Y-complex, NR Y-complex, IR asymmetric unit and P-complex rigid bodies
|
Not available
|
Not available
|
False
|
False
|
|
2
|
1
|
Monte Carlo simulated annealing optimization of multiple rigid bodies with IMP
|
Monte Carlo simulated annealing optimization for CR Y-complex, NR Y-complex and IR asymmetric unit
|
Not available
|
Not available
|
False
|
False
|
| ID | Software name | Software version | Software classification | Software location |
|---|---|---|---|---|
|
1
|
2.9.0
|
integrative model building
|
||
|
2
|
1.14
|
rigid body fitting to EM maps
|