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PDB-IHM

System for Archiving Integrative Structures

2.1. Ensemble information?

This entry consists of 0 distinct ensemble.

2.2. Representation ?

This entry has 1 representation(s).

ID Model(s) Entity ID Molecule name Chain(s) [auth] Total residues Rigid segments Flexible segments Model coverage/
Starting model coverage
(%)		 Scale
1 1 1 Nic96 A1 839 - 1-839 100.00 /
100.00 		Atomic
2 Nup188 B1 1655 - 1-1655 100.00 /
100.00 		Atomic
3 Nup157 D1 1391 - 1-1391 100.00 /
100.00 		Atomic
4 Nup133 K1 1157 - 1-1157 100.00 /
100.00 		Atomic
5 Nup84 L1 726 - 1-726 100.00 /
100.00 		Atomic
6 Nup145c M1 712 - 1-712 100.00 /
100.00 		Atomic
7 Sec13 N1 297 - 1-297 100.00 /
100.00 		Atomic
8 Seh1 O1 349 - 1-349 100.00 /
100.00 		Atomic
9 Nup85 P1 744 - 1-744 100.00 /
100.00 		Atomic
10 Nup120 R1 1037 - 1-1037 100.00 /
100.00 		Atomic

2.3. Datasets used for modeling ?

There are 7 unique datasets used to build the models in this entry.
ID Dataset type Database name Data access code
1
3DEM volume
EMDB
2
3DEM volume
Zenodo
3
3DEM volume
Zenodo
4
Integrative model
PDB
5
Integrative model
PDB
6
Other
Not available
7
Other
Not available

2.4. Methodology and software?

This entry is a result of 1 distinct protocol.
Step number Protocol ID Method name Method type Method description Number of computed models Multi state modeling Multi scale modeling
1
1
Monte Carlo simulated annealing optimization of multiple rigid bodies with IMP
Monte Carlo simulated annealing optimization for NR Y-complex and IR asymmetric unit (outer nuclear copy)
Not available
Not available
False
False
There is 1 software package reported in this entry.
ID Software name Software version Software classification Software location
1
2.9.0
integrative model building