PDBIHM.org

PDB-IHM

System for Archiving Integrative Structures

Ensemble information?

This entry consists of 1 distinct ensemble.

Summary?

This entry consists of 1 model(s). A total of 12 datasets were used to build this entry.

Representation ?

This entry has 1 representation(s).

ID Model(s) Entity ID Molecule name Chain(s) [auth] Total residues Rigid segments Flexible segments Model coverage/
Starting model coverage
(%)		 Scale
1 1 1 CBFB A 182 1-156 157-182 100.00 /
85.71 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
2 Vif B 175 6-154, 166-175 1-5, 155-165 100.00 /
90.86 		Coarse-grained: 1 residue(s) per bead
3 EloB C 161 1-105 106-161 100.00 /
65.22 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
4 EloC D 112 17-112 1-16 100.00 /
85.71 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
5 CUL5 E 780 11-302, 308-382, 405-515, 521-568, 574-687, 695-780 1-10, 303-307, 383-404, 516-520, 569-573, 688-694 100.00 /
93.08 		Coarse-grained: 1 residue(s) per bead
6 Rbx2 F 113 27-113 1-26 100.00 /
76.99 		Coarse-grained: 1 residue(s) per bead
7 A3G G 384 6-194, 200-243, 258-380 1-5, 195-199, 244-257, 381-384 100.00 /
92.71 		Coarse-grained: 1 residue(s) per bead

Datasets used for modeling ?

There are 12 unique datasets used to build the models in this entry.
ID Dataset type Database name Data access code
1
Experimental model
PDB
2
Experimental model
PDB
3
Experimental model
PDB
4
Experimental model
PDB
5
Comparative model
Zenodo
6
Experimental model
PDB
7
Comparative model
Zenodo
8
Experimental model
PDB
9
Comparative model
Zenodo
10
Mass Spectrometry data
PRIDE
11
Crosslinking-MS data
Zenodo
12
Crosslinking-MS data
Zenodo

Methodology and software?

This entry is a result of 1 distinct protocol.
Step number Protocol ID Method name Method type Method description Number of computed models Multi state modeling Multi scale modeling
1
1
Sampling
Replica exchange monte carlo
None
203100
False
True
There are 4 software packages reported in this entry.
ID Software name Software version Software classification Software location
1
develop-548de65454
integrative model building
2
develop-548de65454
integrative model building
3
9.20
comparative modeling
4
9.19
comparative modeling