2.1. Ensemble information?
This entry consists of 0 distinct ensemble.
2.2. Representation ?
This entry has 1 representation(s).
| ID | Model(s) | Entity ID | Molecule name | Chain(s) [auth] | Total residues | Rigid segments | Flexible segments | Model coverage/ Starting model coverage (%) |
Scale |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | 1 | Vimentin | A | 466 | - | 1-466 |
100.00
/ 100.00 |
Atomic |
| B | |||||||||
| C | |||||||||
| D |
2.3. Datasets used for modeling ?
There are 5 unique datasets used to build the models in this entry.| ID | Dataset type | Database name | Data access code |
|---|---|---|---|
|
1
|
3DEM volume
|
EMDB
|
|
|
2
|
3DEM volume
|
Not available
|
Not available
|
|
3
|
Mass Spectrometry data
|
Not available
|
Not available
|
|
4
|
De Novo model
|
Not available
|
Not available
|
|
5
|
De Novo model
|
Not available
|
Not available
|
2.4. Methodology and software?
This entry is a result of 1 distinct protocol.| Step number | Protocol ID | Method name | Method type | Method description | Number of computed models | Multi state modeling | Multi scale modeling |
|---|---|---|---|---|---|---|---|
|
1
|
1
|
Molecular dynamics flexible fitting
|
Molecular dynamics flexible fitting
|
The vimentin dimer starting model was fitted by molecular dynamics flexible fitting to an elongated version of the electron density map EMD-16844. Spatial restraints derived from chemical crosslinking and from an electron density map indicating the position of the vimentin tail domains were applied in the modelling procedure.
|
1
|
False
|
False
|
| ID | Software name | Software version | Software classification | Software location |
|---|---|---|---|---|
|
1
|
2.1.2
|
model building
|
||
|
2
|
2.00
|
model docking
|
||
|
3
|
Not available
|
molecular dynamics flexible fitting
|
||
|
4
|
1.15
|
model visualization
|