Model quality ?
For models with atomic structures, MolProbity analysis is performed. For models with coarse-grained or multi-scale structures, excluded volume analysis is performed.
Standard geometry: bond outliers ?
There are 7 bond length outliers in this entry (0.09% of 7452 assessed bonds). A summary is provided below.| Chain | Res | Type | Atoms | |Z| | Observed (Å) | Ideal (Å) | Model ID (Worst) | Models (Total) |
|---|---|---|---|---|---|---|---|---|
|
C
|
263
|
PRO
|
C-N
|
64.93
|
2.24
|
1.33
|
1
|
1
|
|
C
|
261
|
SER
|
C-N
|
35.78
|
0.83
|
1.33
|
1
|
1
|
|
D
|
413
|
LEU
|
CA-C
|
5.45
|
1.64
|
1.52
|
1
|
1
|
|
D
|
413
|
LEU
|
N-CA
|
5.29
|
1.56
|
1.46
|
1
|
1
|
|
D
|
412
|
SER
|
C-N
|
5.17
|
1.40
|
1.33
|
1
|
1
|
|
A
|
252
|
GLN
|
CA-C
|
4.06
|
1.61
|
1.52
|
1
|
1
|
|
D
|
413
|
LEU
|
C-N
|
4.02
|
1.41
|
1.34
|
1
|
1
|
Standard geometry: angle outliers ?
There are 68 bond angle outliers in this entry (0.73% of 9308 assessed bonds). A summary is provided below.| Chain | Res | Type | Atoms | |Z| | Observed (Å) | Ideal (Å) | Model ID (Worst) | Models (Total) |
|---|---|---|---|---|---|---|---|---|
|
C
|
261
|
SER
|
O-C-N
|
53.53
|
37.35
|
123.00
|
1
|
1
|
|
C
|
263
|
PRO
|
O-C-N
|
20.46
|
155.74
|
123.00
|
1
|
1
|
|
C
|
263
|
PRO
|
CA-C-N
|
18.39
|
79.43
|
116.20
|
1
|
1
|
|
C
|
261
|
SER
|
CA-C-N
|
16.49
|
149.18
|
116.20
|
1
|
1
|
|
C
|
261
|
SER
|
C-N-CA
|
13.30
|
97.77
|
121.70
|
1
|
1
|
|
C
|
263
|
PRO
|
C-N-CA
|
10.68
|
102.48
|
121.70
|
1
|
1
|
|
D
|
253
|
HIS
|
C-N-CA
|
9.73
|
139.22
|
121.70
|
1
|
1
|
|
D
|
413
|
LEU
|
CA-C-N
|
9.66
|
131.39
|
116.90
|
1
|
1
|
|
D
|
410
|
ARG
|
C-N-CA
|
8.92
|
137.76
|
121.70
|
1
|
1
|
|
A
|
253
|
HIS
|
O-C-N
|
7.80
|
110.53
|
123.00
|
1
|
1
|
|
C
|
424
|
ARG
|
C-N-CA
|
7.77
|
135.68
|
121.70
|
1
|
1
|
|
D
|
86
|
PHE
|
C-N-CA
|
7.51
|
135.21
|
121.70
|
1
|
1
|
|
D
|
412
|
SER
|
C-N-CA
|
7.36
|
134.95
|
121.70
|
1
|
1
|
|
A
|
256
|
ILE
|
C-N-CA
|
7.19
|
134.64
|
121.70
|
1
|
1
|
|
C
|
454
|
VAL
|
C-N-CA
|
6.78
|
133.91
|
121.70
|
1
|
1
|
|
A
|
436
|
THR
|
C-N-CA
|
6.72
|
133.79
|
121.70
|
1
|
1
|
|
D
|
253
|
HIS
|
CA-C-N
|
6.65
|
129.51
|
116.20
|
1
|
1
|
|
B
|
435
|
ASP
|
C-N-CA
|
6.50
|
133.40
|
121.70
|
1
|
1
|
|
B
|
85
|
ASP
|
C-N-CA
|
6.50
|
133.40
|
121.70
|
1
|
1
|
|
C
|
435
|
ASP
|
C-N-CA
|
6.50
|
133.40
|
121.70
|
1
|
1
|
|
C
|
413
|
LEU
|
CA-C-N
|
6.37
|
126.46
|
116.90
|
1
|
1
|
|
D
|
447
|
VAL
|
C-N-CA
|
6.34
|
133.10
|
121.70
|
1
|
1
|
|
D
|
253
|
HIS
|
O-C-N
|
6.29
|
112.93
|
123.00
|
1
|
1
|
|
C
|
85
|
ASP
|
C-N-CA
|
6.02
|
132.54
|
121.70
|
1
|
1
|
|
A
|
436
|
THR
|
O-C-N
|
5.94
|
113.50
|
123.00
|
1
|
1
|
|
C
|
264
|
ASP
|
C-N-CA
|
5.79
|
132.13
|
121.70
|
1
|
1
|
|
D
|
412
|
SER
|
CA-C-O
|
5.66
|
111.17
|
120.80
|
1
|
1
|
|
D
|
254
|
VAL
|
C-N-CA
|
5.53
|
131.66
|
121.70
|
1
|
1
|
|
A
|
252
|
GLN
|
C-N-CA
|
5.49
|
131.58
|
121.70
|
1
|
1
|
|
D
|
412
|
SER
|
CA-C-N
|
5.48
|
127.15
|
116.20
|
1
|
1
|
|
C
|
417
|
ASN
|
C-N-CA
|
5.45
|
131.50
|
121.70
|
1
|
1
|
|
B
|
263
|
PRO
|
C-N-CA
|
5.42
|
131.46
|
121.70
|
1
|
1
|
|
D
|
414
|
PRO
|
N-CA-C
|
5.38
|
125.56
|
112.10
|
1
|
1
|
|
D
|
465
|
LEU
|
C-N-CA
|
5.35
|
131.34
|
121.70
|
1
|
1
|
|
A
|
250
|
GLN
|
C-N-CA
|
5.31
|
131.26
|
121.70
|
1
|
1
|
|
D
|
413
|
LEU
|
O-C-N
|
5.24
|
114.61
|
123.00
|
1
|
1
|
|
A
|
253
|
HIS
|
C-N-CA
|
5.07
|
130.83
|
121.70
|
1
|
1
|
|
D
|
447
|
VAL
|
CA-C-N
|
5.06
|
126.32
|
116.20
|
1
|
1
|
|
A
|
254
|
VAL
|
C-N-CA
|
4.94
|
130.58
|
121.70
|
1
|
1
|
|
C
|
454
|
VAL
|
O-C-N
|
4.88
|
115.20
|
123.00
|
1
|
1
|
|
C
|
436
|
THR
|
C-N-CA
|
4.77
|
130.29
|
121.70
|
1
|
1
|
|
A
|
257
|
ASP
|
N-CA-C
|
4.70
|
124.17
|
111.00
|
1
|
1
|
|
A
|
255
|
GLN
|
CA-C-N
|
4.65
|
106.89
|
116.20
|
1
|
1
|
|
A
|
426
|
THR
|
CA-C-O
|
4.64
|
112.91
|
120.80
|
1
|
1
|
|
D
|
414
|
PRO
|
C-N-CA
|
4.63
|
130.04
|
121.70
|
1
|
1
|
|
D
|
418
|
PHE
|
C-N-CA
|
4.54
|
129.86
|
121.70
|
1
|
1
|
|
A
|
436
|
THR
|
CA-C-N
|
4.51
|
125.23
|
116.20
|
1
|
1
|
|
C
|
423
|
LEU
|
C-N-CA
|
4.49
|
129.79
|
121.70
|
1
|
1
|
|
D
|
413
|
LEU
|
CA-C-O
|
4.47
|
113.20
|
120.80
|
1
|
1
|
|
C
|
415
|
LEU
|
CA-C-N
|
4.45
|
123.57
|
116.90
|
1
|
1
|
|
A
|
421
|
LEU
|
C-N-CA
|
4.40
|
129.62
|
121.70
|
1
|
1
|
|
B
|
264
|
ASP
|
C-N-CA
|
4.38
|
129.59
|
121.70
|
1
|
1
|
|
D
|
447
|
VAL
|
O-C-N
|
4.37
|
116.01
|
123.00
|
1
|
1
|
|
C
|
68
|
VAL
|
C-N-CA
|
4.34
|
129.52
|
121.70
|
1
|
1
|
|
A
|
264
|
ASP
|
C-N-CA
|
4.32
|
129.48
|
121.70
|
1
|
1
|
|
C
|
436
|
THR
|
O-C-N
|
4.26
|
116.18
|
123.00
|
1
|
1
|
|
C
|
435
|
ASP
|
O-C-N
|
4.25
|
116.20
|
123.00
|
1
|
1
|
|
A
|
260
|
VAL
|
C-N-CA
|
4.23
|
129.31
|
121.70
|
1
|
1
|
|
B
|
253
|
HIS
|
CA-C-N
|
4.20
|
124.59
|
116.20
|
1
|
1
|
|
B
|
435
|
ASP
|
CA-C-N
|
4.19
|
124.59
|
116.20
|
1
|
1
|
|
A
|
239
|
GLU
|
C-N-CA
|
4.18
|
129.22
|
121.70
|
1
|
1
|
|
C
|
24
|
PRO
|
C-N-CA
|
4.16
|
129.19
|
121.70
|
1
|
1
|
|
B
|
466
|
GLU
|
CA-C-O
|
4.09
|
113.85
|
120.80
|
1
|
1
|
|
D
|
96
|
PHE
|
C-N-CA
|
4.08
|
129.05
|
121.70
|
1
|
1
|
|
B
|
412
|
SER
|
O-C-N
|
4.07
|
116.48
|
123.00
|
1
|
1
|
|
A
|
2
|
SER
|
C-N-CA
|
4.07
|
129.02
|
121.70
|
1
|
1
|
|
A
|
10
|
SER
|
C-N-CA
|
4.04
|
128.97
|
121.70
|
1
|
1
|
|
A
|
18
|
PRO
|
C-N-CA
|
4.01
|
128.92
|
121.70
|
1
|
1
|
Too-close contacts ?
The following all-atom clashscore is based on a MolProbity analysis. All-atom clashscore is defined as the number of clashes found per 1000 atoms (including hydrogen atoms). The table below contains clashscores for all atomic models in this entry.
| Model ID | Clash score | Number of clashes |
|---|---|---|
|
1
|
1.49
|
14
|
There are 14 clashes. The table below contains the detailed list of all clashes based on a MolProbity analysis. Bad clashes are >= 0.4 Angstrom.
| Atom 1 | Atom 2 | Clash(Å) | Model ID (Worst) | Models (Total) |
|---|---|---|---|---|
|
C:261:SER:C
|
C:262:LYS:CA
|
1.52
|
1
|
1
|
|
C:263:PRO:C
|
C:264:ASP:N
|
0.96
|
1
|
1
|
|
C:261:SER:CA
|
C:262:LYS:N
|
0.95
|
1
|
1
|
|
C:261:SER:C
|
C:262:LYS:N
|
0.93
|
1
|
1
|
|
C:261:SER:O
|
C:262:LYS:CA
|
0.80
|
1
|
1
|
|
C:263:PRO:CA
|
C:264:ASP:N
|
0.77
|
1
|
1
|
|
C:261:SER:O
|
C:262:LYS:N
|
0.64
|
1
|
1
|
|
C:261:SER:CA
|
C:262:LYS:CA
|
0.53
|
1
|
1
|
|
D:409:SER:C
|
D:411:ILE:H
|
0.47
|
1
|
1
|
|
B:431:LEU:C
|
B:433:LEU:H
|
0.46
|
1
|
1
|
|
C:261:SER:C
|
C:262:LYS:C
|
0.46
|
1
|
1
|
|
D:95:GLU:C
|
D:97:LYS:H
|
0.43
|
1
|
1
|
|
C:17:GLY:C
|
C:19:GLY:HA3
|
0.41
|
1
|
1
|
|
C:263:PRO:C
|
C:264:ASP:CA
|
0.40
|
1
|
1
|
Torsion angles: Protein backbone ?
In the following table, Ramachandran outliers are listed. The Analysed column shows the number of residues for which the backbone conformation was analysed.
| Model ID | Analysed | Favored | Allowed | Outliers |
|---|---|---|---|---|
|
1
|
1854
|
1607
|
193
|
54
|
| Chain | Res | Type | Models (Total) |
|---|---|---|---|
|
A
|
9
|
SER
|
1
|
|
A
|
19
|
GLY
|
1
|
|
A
|
85
|
ASP
|
1
|
|
A
|
144
|
SER
|
1
|
|
A
|
257
|
ASP
|
1
|
|
A
|
258
|
VAL
|
1
|
|
A
|
263
|
PRO
|
1
|
|
A
|
265
|
LEU
|
1
|
|
A
|
413
|
LEU
|
1
|
|
A
|
414
|
PRO
|
1
|
|
A
|
437
|
HIS
|
1
|
|
B
|
4
|
ARG
|
1
|
|
B
|
21
|
ALA
|
1
|
|
B
|
34
|
SER
|
1
|
|
B
|
76
|
GLY
|
1
|
|
B
|
79
|
LEU
|
1
|
|
B
|
264
|
ASP
|
1
|
|
B
|
420
|
SER
|
1
|
|
B
|
431
|
LEU
|
1
|
|
B
|
435
|
ASP
|
1
|
|
B
|
437
|
HIS
|
1
|
|
B
|
438
|
SER
|
1
|
|
C
|
6
|
VAL
|
1
|
|
C
|
18
|
PRO
|
1
|
|
C
|
25
|
SER
|
1
|
|
C
|
62
|
ALA
|
1
|
|
C
|
69
|
ARG
|
1
|
|
C
|
71
|
ARG
|
1
|
|
C
|
85
|
ASP
|
1
|
|
C
|
200
|
GLU
|
1
|
|
C
|
265
|
LEU
|
1
|
|
C
|
413
|
LEU
|
1
|
|
C
|
414
|
PRO
|
1
|
|
C
|
418
|
PHE
|
1
|
|
C
|
420
|
SER
|
1
|
|
C
|
455
|
ILE
|
1
|
|
C
|
463
|
ASP
|
1
|
|
D
|
31
|
VAL
|
1
|
|
D
|
77
|
VAL
|
1
|
|
D
|
84
|
VAL
|
1
|
|
D
|
87
|
SER
|
1
|
|
D
|
142
|
GLY
|
1
|
|
D
|
252
|
GLN
|
1
|
|
D
|
254
|
VAL
|
1
|
|
D
|
255
|
GLN
|
1
|
|
D
|
259
|
ASP
|
1
|
|
D
|
411
|
ILE
|
1
|
|
D
|
412
|
SER
|
1
|
|
D
|
413
|
LEU
|
1
|
|
D
|
414
|
PRO
|
1
|
|
D
|
439
|
LYS
|
1
|
|
D
|
441
|
THR
|
1
|
|
D
|
446
|
THR
|
1
|
|
D
|
447
|
VAL
|
1
|
Torsion angles : Protein sidechains ?
In the following table, sidechain rotameric outliers are listed. The Analysed column shows the number of residues for which the sidechain conformation was analysed.| Model ID | Analysed | Favored | Allowed | Outliers |
|---|---|---|---|---|
|
1
|
0
|
0
|
0
|
0
|