2.1. Ensemble information?
This entry consists of 1 distinct ensemble.
2.2. Representation ?
This entry has 1 representation(s).
| ID | Model(s) | Entity ID | Molecule name | Chain(s) [auth] | Total residues | Rigid segments | Flexible segments | Model coverage/ Starting model coverage (%) |
Scale |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | 1 | snRNA-activating protein complex subunit 2 | A | 334 | 29-87, 97-160, 201-271, 304-334 | 1-28, 88-96, 161-200, 272-303 |
100.00
/ 67.37 |
Multiscale: Coarse-grained: 1 - 10 residue(s) per bead |
| 2 | snRNA-activating protein complex subunit 3 | B | 411 | 27-411 | 1-26 |
100.00
/ 93.67 |
Multiscale: Coarse-grained: 1 - 10 residue(s) per bead | ||
| 3 | snRNA-activating protein complex subunit 5 | C | 98 | 3-52 | 1-2, 53-98 |
100.00
/ 51.02 |
Multiscale: Coarse-grained: 1 - 10 residue(s) per bead | ||
| 4 | snRNA-activating protein complex subunit 1 | D | 368 | 1-141, 162-234 | 142-161, 235-368 |
100.00
/ 58.15 |
Multiscale: Coarse-grained: 1 - 20 residue(s) per bead | ||
| 5 | snRNA-activating protein complex subunit 4 | E | 1519 | 122-163, 182-416, 424-541, 706-799, 806-859, 1304-1434 | 41-121, 164-181, 417-423, 542-705, 800-805, 860-1303, 1435-1519 |
97.37
/ 45.57 |
Multiscale: Coarse-grained: 1 - 20 residue(s) per bead | ||
| 6 | T strand | F | 20 | 1-20 | - |
100.00
/ 100.00 |
Coarse-grained: 1 residue(s) per bead | ||
| 7 | NT strand | G | 20 | 1-20 | - |
100.00
/ 100.00 |
Coarse-grained: 1 residue(s) per bead |
2.3. Datasets used for modeling ?
There are 8 unique datasets used to build the models in this entry.| ID | Dataset type | Database name | Data access code |
|---|---|---|---|
|
5
|
Crosslinking-MS data
|
PRIDE
|
|
|
6
|
3DEM volume
|
EMDB
|
|
|
7
|
3DEM volume
|
Zenodo
|
|
|
8
|
De Novo model
|
MODEL ARCHIVE
|
|
|
9
|
Experimental model
|
PDB
|
|
|
10
|
Experimental model
|
PDB
|
|
|
11
|
Experimental model
|
PDB
|
|
|
12
|
3DEM volume
|
Zenodo
|
2.4. Methodology and software?
This entry is a result of 1 distinct protocol.| Step number | Protocol ID | Method name | Method type | Method description | Number of computed models | Multi state modeling | Multi scale modeling |
|---|---|---|---|---|---|---|---|
|
1
|
1
|
Sampling
|
Replica exchange monte carlo
|
Not available
|
320000
|
False
|
True
|
| ID | Software name | Software version | Software classification | Software location |
|---|---|---|---|---|
|
1
|
2.20.0
|
integrative model building
|
||
|
2
|
2.20.0
|
integrative model building
|
||
|
3
|
0.30.7
|
structure prediction
|
||
|
4
|
2.3.2
|
structure prediction
|