PDBIHM.org

PDB-IHM

System for Archiving Integrative Structures

Ensemble information?

This entry consists of 4 distinct ensembles.

Summary?

This entry consists of 4 model(s). A total of 5 datasets were used to build this entry.

Representation ?

This entry has 1 representation(s).

ID Model(s) Entity ID Molecule name Chain(s) [auth] Total residues Rigid segments Flexible segments Model coverage/
Starting model coverage
(%)		 Scale
1 1-4 1 Dis3 A 1001 9-237, 249-329, 364-471, 472-1001 1-8, 238-248, 330-363 100.00 /
94.71 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
2 Rrp45 B 305 2-301 1, 302-305 100.00 /
98.36 		Multiscale: Coarse-grained: 1 - 4 residue(s) per bead
3 Rrp4 C 359 2-17, 50-102, 103-245, 275-357 1, 18-49, 246-274, 358-359 100.00 /
82.17 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
4 Csl4 D 292 1-71, 99-113, 126-162, 185-291 72-98, 114-125, 163-184, 292 100.00 /
78.77 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
5 Mtr3 E 250 4-22, 42-149, 163-248 1-3, 23-41, 150-162, 249-250 100.00 /
85.20 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
6 Rrp40 F 240 1-60, 61-236 237-240 100.00 /
98.33 		Multiscale: Coarse-grained: 1 - 4 residue(s) per bead
7 Rrp42 G 265 1-265 - 100.00 /
100.00 		Coarse-grained: 1 residue(s) per bead
8 Ski6 H 265 1-242 243-265 100.00 /
91.32 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
9 Rrp46_gfp I 475 1-223, 247-475 224-246 100.00 /
95.16 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
10 Rrp43 J 394 7-99, 121-193, 206-309, 327-394 1-6, 100-120, 194-205, 310-326 100.00 /
85.79 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
11 Lrp1 K 184 - 1-184 100.00 /
0.00 		Multiscale: Coarse-grained: 4 - 5 residue(s) per bead
12 Rrp6 L 733 127-516, 532-557, 565-619 1-126, 517-531, 558-564, 620-733 100.00 /
64.26 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
13 MPP6 M 186 - 1-186 100.00 /
0.00 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead
15 Ski7 N 747 259-747 1-258 100.00 /
65.46 		Multiscale: Coarse-grained: 1 - 5 residue(s) per bead

Datasets used for modeling ?

There are 5 unique datasets used to build the models in this entry.
ID Dataset type Database name Data access code
1
Experimental model
PDB
2
Experimental model
PDB
3
Experimental model
PDB
4
Comparative model
Zenodo
5
Crosslinking-MS data
Zenodo

Methodology and software?

This entry is a result of 2 distinct protocols.
Step number Protocol ID Method name Method type Method description Number of computed models Multi state modeling Multi scale modeling
1
1
Sampling
Replica exchange monte carlo
None
50000
True
True
1
2
Sampling
Replica exchange monte carlo
None
50000
True
True
There are 3 software packages reported in this entry.
ID Software name Software version Software classification Software location
1
develop-0a5706e202
integrative model building
2
67456c0
integrative model building
3
2.00
protein homology modeling