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PDB-IHM

System for Archiving Integrative Structures

8ZZA

Model
PDB ID 8ZZA
PDB-Dev ID PDBDEV_00000010
Structure Title Integrative structure and functional anatomy of a single spoke of a nuclear pore complex
Structure Authors Kim SJ; Fernandez-Martinez J; Nudelman I; Shi Y; Zhang W; Raveh B; Herricks T; Slaughter BD; Hogan JA; Upla P; Chemmama IE; Pellarin R; Echeverria I; Shivaraju M; Chaudhury AS; Wang J; Williams R; Unruh JR; Greenberg CH; Jacobs EY; Yu Z; de la Cruz MJ; Mironska R; Stokes DL; Aitchison JD; Jarrold MF; Gerton JL; Ludtke SJ; Akey CW; Chait BT; Sali A; Rout MP
Deposited on 2018-01-04

Overall quality ?

This validation report contains model quality assessments for all structures. For more detail for each assessment, use the dropdown menus at the top of this page. Number of plots is limited to 256.

Data quality assessment for SAS datasets and fit to model assessments for SAS datasets is also included in this assessment. Data quality and fit to model assessments for other datasets and model uncertainty are under development.

The following software was used in the production of this report:

Acknowledgments

  • The development of integrative model validation metrics, implementation of a model validation pipeline, and creation of a validation report for integrative structures are funded by NSF awards to the PDB-IHM team (DBI-1756248, DBI-2112966, DBI-2112967, DBI-2112968, and DBI-1756250) and awards from NSF, NIH, and DOE to the RCSB PDB (DBI-2321666, R01GM157729, and DE-SC0019749). The PDB-IHM team and members of the Sali lab contributed model validation metrics and software packages.

  • Dr. Jill Trewhella, Dr. Dina Schneidman, and members of the SASBDB repository are acknowledged for their advice and support in implementing SAS validation methods. Team members from the labs of Dr. Juri Rappsilber, Dr. Alexander Leitner, Dr. Andrea Graziadei, and members of PRIDE database are acknowledged for their advice and support in implementing crosslinking-MS validation methods. We are grateful to Dr. Shruthi Viswanath for discussions about uncertainty assessment of integrative structural models.

  • Members of the wwPDB Integrative/Hybrid Methods Task Force provided recommendations and community support for the project.